Browse Element(s) Details


Os.9731.1.S1_at

Description gb:AK105676.1
DB_XREF= gi:32990885
TID=Os.9731.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A12, full insert sequence.
FL= gb:AK105676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3681010/11glycoside hydrolase family 28 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36780NANA12+22515213..22521028retrotransposon protein, putative, unclassified
LOC_Os12g36790NANA12+22521344..22524940retrotransposon protein, putative, unclassified
LOC_Os12g36800NANA12+22527783..22528107hypothetical protein
LOC_Os12g36810Os.9731.1.S1_at10/1112+22539245..22542581glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9731.1.S1_at--235--3871Chr12:22542068..22542092 (25 bp)
CTGATTCGACACAATCCAGCTCTTG
LOC_Os12g36810
Os.9731.1.S1_at--129--1591Chr12:22542085..22542109 (25 bp)
AGCTCTTGGTCTTGCTCCAACATCT
LOC_Os12g36810
Os.9731.1.S1_at--276--611Chr12:22542203..22542227 (25 bp)
ATGCCCTTGCTGCAGCATAAGTGCA
LOC_Os12g36810
Os.9731.1.S1_at--73--4971Chr12:22542225..22542249 (25 bp)
GCATAAAGTACCAAGTGTCCATCCT
LOC_Os12g36810
Os.9731.1.S1_at--1091--2271Chr12:22542282..22542306 (25 bp)
AAATCCAACTTTTGTCACCATCTTC
LOC_Os12g36810
Os.9731.1.S1_at--1129--9551Chr12:22542302..22542326 (25 bp)
TCTTCCTTCCAAATTCTTTCCAAAT
LOC_Os12g36810
Os.9731.1.S1_at--828--2731Chr12:22542337..22542361 (25 bp)
AAGAATCACCACTCTTCTTGTGCTA
LOC_Os12g36810
Os.9731.1.S1_at--57--10831Chr12:22542354..22542378 (25 bp)
TTGTGCTACCAGCTTTGAGGCTCAT
LOC_Os12g36810
Os.9731.1.S1_at--428--7671Chr12:22542423..22542447 (25 bp)
GGGTTCTCTGCACAATGAAGTGTTT
LOC_Os12g36810
Os.9731.1.S1_at--1139--7151Chr12:22542527..22542551 (25 bp)
GTCTCTCCATACTACTGTCAATTTT
LOC_Os12g36810
Os.9731.1.S1_at--1077--6871Chr12:22542591..22542615 (25 bp)
GTATATCCCAATCAATCTTGTGAGA
NONE
Target Sequence 
CTGATTCGACACAATCCAGCTCTTGGTCTTGCTCCAACATCTCCGGNATACTCTGANTTGNNCTTTCCNAGAGCCTTGCC
CNAGNACCTCCACCATTCATCCNCCAATTCNTCCATCTGCTTCTCCCTTNTTACCTACCATGCCCTTGCTGCAGCATAAG
TGCATAAAGTACCAAGTGTCCATCCTTCGCTGTTCCAGTCCTTGTACAATCCAGAGAAAAATCCAACTTTTGTCACCATC
TTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGCTTTGAGGCTCATGGATG
GAACAATCTATGCTGGTTTGTCNAATGAGGAAGTCTAGAGGGGTTCTCTGCACAATGAAGTGTTTGCTTGTACAGTTAAG
ATTTGTTCATTCAATCTGTNAAGAAAAAAACATTTTTTTTTGGTAGAGGGGATAAGTCTTAGAGAGTCTCTCCATACTAC
TGTCAATTTTGGTCATATAAAATAAAACATATTATGATTGAGTCANCCTGTATATCCCAATCAATCTTGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis