Browse Element(s) Details


OsAffx.32059.1.S1_at

Description tigr:9640.m03570
TID=OsAffx.32059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3684010/11pathogenesis-related protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36800NANA12+22527783..22528107hypothetical protein
LOC_Os12g36810Os.9731.1.S1_at10/1112+22539245..22542581glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32059.1.S1_at--167--8431Chr12:22551858..22551882 (25 bp)
GGCCGGGCACCGTTGTCATTCTGAA
LOC_Os12g36840
OsAffx.32059.1.S1_at--619--8251Chr12:22551863..22551887 (25 bp)
GGCACCGTTGTCATTCTGAAGTTTA
LOC_Os12g36840
OsAffx.32059.1.S1_at--356--7131Chr12:22551872..22551893 (22 bp)
GTCATTCTGAAGTTTAACCCTGCTG
LOC_Os12g36840
OsAffx.32059.1.S1_at--718--6811NONE
GTTTAACCCTGCTGTTAAGCAAGGG
NONE
OsAffx.32059.1.S1_at--1119--9691Chr12:22552432..22552456 (25 bp)
TAAGCAAGGGTTATACAAGACACGT
LOC_Os12g36840
OsAffx.32059.1.S1_at--1125--6771Chr12:22552441..22552465 (25 bp)
GTTATACAAGACACGTGTGGTGGCA
LOC_Os12g36840
OsAffx.32059.1.S1_at--608--8251Chr12:22552462..22552486 (25 bp)
GGCACGTGACAACGCTTCTCATTTT
LOC_Os12g36840
OsAffx.32059.1.S1_at--1030--1891Chr12:22552465..22552489 (25 bp)
ACGTGACAACGCTTCTCATTTTCTC
LOC_Os12g36840
OsAffx.32059.1.S1_at--801--9591Chr12:22552480..22552504 (25 bp)
TCATTTTCTCAAGTCAGAGGTGCTG
LOC_Os12g36840
OsAffx.32059.1.S1_at--1043--5011Chr12:22552518..22552542 (25 bp)
GCAGGGCAGGCAAGCTCAAGACACA
LOC_Os12g36840
OsAffx.32059.1.S1_at--144--7291Chr12:22552572..22552596 (25 bp)
GTGCCGGCTCCTGTATGGCCAAGCT
LOC_Os12g36840
Target Sequence 
GGCCGGGCACCGTTGTCATTCTGAAGTTTAACCCTGCTGTTAAGCAAGGGTTATACAAGACACGTGTGGTGGCACGTGAC
AACGCTTCTCATTTTCTCAAGTCAGAGGTGCTGGAGGTGGCGCTTGGCAGGGCAGGCAAGCTCAAGACACACTTGACGGA
GACGAAGCTTGAGGCCACCGGTGCCGGCTCCTGTATGGCCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis