Browse Element(s) Details

Os.47802.1.A1_at

Description

gb:BX927948
DB_XREF= gi:41882494
DB_XREF=BX927948
CLONE=p841e07p3
TID=Os.47802.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47802 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os12g36840	9/11	pathogenesis-related protein 10, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os12g36800	NA	NA	12	+	22527783..22528107	hypothetical protein
LOC_Os12g36810	Os.9731.1.S1_at	10/11	12	+	22539245..22542581	glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820	OsAffx.7814.1.S1_at	11/11	12	+	22544634..22545174	hypothetical protein
LOC_Os12g36830	Os.5031.1.S1_at	10/11	12	+	22547233..22548410	pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840	OsAffx.32059.1.S1_at	10/11	12	+	22551624..22552996	pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840	Os.47802.1.A1_at	9/11	12	+	22551624..22552996	pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850	Os.2423.1.S1_at	10/11	12	+	22558115..22559944	Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860	OsAffx.32060.1.S1_s_at	9/11	12	+	22561808..22563435	pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870	Os.20677.1.S1_at	11/11	12	+	22564266..22565433	seed imbibition protein, putative, expressed
LOC_Os12g36880	Os.165.1.S1_at	11/11	12	+	22566409..22567683	Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890	Os.57510.1.S1_x_at	11/11	12	+	22569379..22573532	cellulose synthase family protein, putative, expressed
LOC_Os12g36890	OsAffx.16586.1.S1_x_at	1/11	12	+	22569379..22573532	cellulose synthase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47802.1.A1_at--255--743	1	NONE	GTGTTACAAACCGACATAATGCATT	NONE
Os.47802.1.A1_at--1112--235	1	NONE	AAACCGACATAATGCATTCATCGCG	NONE
Os.47802.1.A1_at--365--907	1	Chr12:22552755..22552779 (25 bp)	TGCATTCATCGCGTGCATGATAATT	LOC_Os12g36840
Os.47802.1.A1_at--75--355	1	Chr12:22552761..22552785 (25 bp)	CATCGCGTGCATGATAATTAAATAA	LOC_Os12g36840
Os.47802.1.A1_at--134--1049	1	Chr12:22552778..22552802 (25 bp)	TTAAATAACGTTCGTGAGCCACAAC	LOC_Os12g36840
Os.47802.1.A1_at--25--739	1	Chr12:22552791..22552815 (25 bp)	GTGAGCCACAACAAATCCAATTTCT	LOC_Os12g36840
Os.47802.1.A1_at--337--1025	1	Chr12:22552823..22552847 (25 bp)	TTTGATTTCATGTGGGTGGTTGTGT	LOC_Os12g36840
Os.47802.1.A1_at--495--361	1	Chr12:22552859..22552883 (25 bp)	CTTGTGTTATTTCAGTAGTTGTCAT	LOC_Os12g36840
Os.47802.1.A1_at--496--1033	1	Chr12:22552868..22552892 (25 bp)	TTTCAGTAGTTGTCATAGTGTTGTC	LOC_Os12g36840
Os.47802.1.A1_at--1110--747	1	Chr12:22552908..22552932 (25 bp)	GTGTGTGATATTTTCAGTGTTGGTG	LOC_Os12g36840
Os.47802.1.A1_at--406--111	1	Chr12:22552923..22552947 (25 bp)	AGTGTTGGTGAGATCATTTTGTTTC	LOC_Os12g36840

Target Sequence

GTGTTACAAACCGACATAATGCATTCATCGCGTGCATGATAATTAAATAACGTTCGTGAGCCACAACAAATCCAATTTCT
TGTGGTGTTTGATTTCATGTGGGTGGTTGTGTGTGAAAGATAACTTGTGTTATTTCAGTAGTTGTCATAGTGTTGTCNNN
NNNNNTGTGTGTGTGTGTGATATTTTCAGTGTTGGTGAGATCATTTTGTTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis