Browse Element(s) Details


Os.165.1.S1_at

Description gb:AK071613.1
DB_XREF= gi:32981636
TID=Os.165.1
CNT=84
FEA=FLmRNA
TIER=FL+Stack
STK=34
UG=Os.165 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for probenazole-inducible protein PBZ1, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104B18, full insert sequence.
FL= gb:D38170.1 gb:AK071613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3688011/11Pathogenesis-related protein Bet v I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36810Os.9731.1.S1_at10/1112+22539245..22542581glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.165.1.S1_at--1066--4211Chr12:22567083..22567107 (25 bp)
CCGCGGGTGTGGGAAGCACATACAA
LOC_Os12g36880
Os.165.1.S1_at--722--1491Chr12:22567097..22567121 (25 bp)
AGCACATACAAGACCCGGGTGGCGG
LOC_Os12g36880
Os.165.1.S1_at--735--4071Chr12:22567126..22567150 (25 bp)
CGACGCCGCAAGTCATGTCCTAAAG
LOC_Os12g36880
Os.165.1.S1_at--477--7251Chr12:22567142..22567166 (25 bp)
GTCCTAAAGTCGGATGTGCTCGAGG
LOC_Os12g36880
Os.165.1.S1_at--1023--5651Chr12:22567307..22567331 (25 bp)
GACATCGTGGATGGCTACTATGGCA
LOC_Os12g36880
Os.165.1.S1_at--876--6231Chr12:22567316..22567340 (25 bp)
GATGGCTACTATGGCATGCTCAAGA
LOC_Os12g36880
Os.165.1.S1_at--1059--5571Chr12:22567458..22567482 (25 bp)
GAAATGTCCAAATTCTCGTGGCGTT
LOC_Os12g36880
Os.165.1.S1_at--449--9491Chr12:22567471..22567495 (25 bp)
TCTCGTGGCGTTTGAGTCCGTGAGA
LOC_Os12g36880
Os.165.1.S1_at--771--7251Chr12:22567486..22567510 (25 bp)
GTCCGTGAGAGTAATTTCGTGCTTT
LOC_Os12g36880
Os.165.1.S1_at--376--6871Chr12:22567513..22567537 (25 bp)
GTTTGTGGTTGTGTTTATGTGCCTT
LOC_Os12g36880
Os.165.1.S1_at--393--8691Chr12:22567530..22567554 (25 bp)
TGTGCCTTTCTATGGTCGTATTCAG
LOC_Os12g36880
Target Sequence 
CCGCGGGTGTGGGAAGCACATACAAGACCCGGGTGGCGGTGTGCGACGCCGCAAGTCATGTCCTAAAGTCGGATGTGCTC
GAGGCAGAAAGCAAGGTGGGGAAGCTCAAGTCACACTCGACGGAGACGAAGCTTGAGGCCACCGGCGATGGCTCCTGTGT
GGCCAAGCTCAAGGTGGAGTACGAGCTCGAGGACGGCAGCTCACTGTCGCCGGAGAAGGAGAAGGACATCGTGGATGGCT
ACTATGGCATGCTCAAGATGATCGAGGACTACCTCGTCGCTCACCCTGCCGAATACGCCTAAGATGAAGAGGAATACTGC
CTCTATCCAGTATATCCCACCTAGAGTGAGTGATAATTAAATAATGAGAGCCGCAGAAATGTCCAAATTCTCGTGGCGTT
TGAGTCCGTGAGAGTAATTTCGTGCTTTAAGTTTGTGGTTGTGTTTATGTGCCTTTCTATGGTCGTATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis