Browse Element(s) Details


Os.20677.1.S1_at

Description gb:AK061098.1
DB_XREF= gi:32971116
TID=Os.20677.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A08, full insert sequence.
FL= gb:AK061098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3687011/11seed imbibition protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36810Os.9731.1.S1_at10/1112+22539245..22542581glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20677.1.S1_at--84--1831Chr12:22564894..22564918 (25 bp)
ACGCCATTGCGCAGGTCGCCGATGA
LOC_Os12g36870
Os.20677.1.S1_at--61--4131Chr12:22565152..22565176 (25 bp)
CGCTCAGGGTGCATGGTTGCGACCA
LOC_Os12g36870
Os.20677.1.S1_at--1074--9931Chr12:22565244..22565268 (25 bp)
TACGACGGCGACACGAGGACATGCT
LOC_Os12g36870
Os.20677.1.S1_at--750--6131Chr12:22565273..22565297 (25 bp)
GAGGGACCCGCGTCGGATTAATTTG
LOC_Os12g36870
Os.20677.1.S1_at--910--3191Chr12:22565301..22565325 (25 bp)
CAAGGGAAAACTGGTCTTTAATGAT
LOC_Os12g36870
Os.20677.1.S1_at--804--3891Chr12:22565311..22565335 (25 bp)
CTGGTCTTTAATGATTATTTCTCTC
LOC_Os12g36870
Os.20677.1.S1_at--168--2451Chr12:22565357..22565381 (25 bp)
AAAATAATCTCACCGGTGTCCAGCA
LOC_Os12g36870
Os.20677.1.S1_at--1055--9731Chr12:22565361..22565385 (25 bp)
TAATCTCACCGGTGTCCAGCAGCTA
LOC_Os12g36870
Os.20677.1.S1_at--753--10471Chr12:22565387..22565411 (25 bp)
TTAACAGTTTTTTGTGATGCCCTAC
LOC_Os12g36870
Os.20677.1.S1_at--313--6811Chr12:22565393..22565417 (25 bp)
GTTTTTTGTGATGCCCTACAGCAAA
LOC_Os12g36870
Os.20677.1.S1_at--1135--9156Chr12:22565404..22565428 (25 bp)
TGCCCTACAGCAAATACACGTTCTT
LOC_Os12g36870
Target Sequence 
ACGCCATTGCGCAGGTCGCCGATGATGGCGACGGCGACGACGGCTGGGATGGGGAGGCCGTGGCGTACATGCAACGGGCG
CGTGAGCTGGTCCGGCTGCCGTGCGACNCCGTACTGCCGGTGACGCTCGGGGCGCTCGATTACGAGGTGTTCCACGTCTG
CCCCGTCCGCGCTATCGCANATGGCGCCGGGAGGCACCGTCGTTGCGTTCNGCGCCCGTCGGGCTCCTTGACACCGTCGA
CGCCNCCGCCGCCGCCGTGGCGCTCAGGGTGCATGGTTGCGACCANTTTTGGCGCCTACTTCTCGCGGAGGCCGGCGAGG
TGCACGCTCGATGGCGCCGACGTGGGGTTCACCTACGACGGCGACACGAGGACATGCTCACNAGAGGGACCCGCGTCGGA
TTAATTTGAGCNCAAGGGAAAACTGGTCTTTAATGATTATTTCTCTCTCCTATTCCTCCNAAAATAATAAAATAATCTCA
CCGGTGTCCAGCAGCTAATTAACAGTTTTTTGTGATGCCCTACAGCAAATACACGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis