Browse Element(s) Details


OsAffx.7836.1.S1_at

Description tigr:9640.m03842
TID=OsAffx.7836.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3941011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39389NANA12+24198971..24199256NA
LOC_Os12g39400Os.16453.1.S1_at11/1112+24203630..24204843Zinc finger, C2H2 type family protein, expressed
LOC_Os12g39410OsAffx.7836.1.S1_at11/1112+24209121..24211334hypothetical protein
LOC_Os12g39420Os.8931.1.S1_x_at11/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39420Os.8931.2.S1_at4/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39430OsAffx.20025.1.S1_at11/1112+24232447..24239295hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7836.1.S1_at--766--2311Chr12:24211080..24211102 (23 bp)
AAAGGATGGCAAAGTCGGCACCGAC
LOC_Os12g39410
OsAffx.7836.1.S1_at--942--9411Chr12:24211066..24211090 (25 bp)
TCGGCACCGACCTGGTACTACTGGG
LOC_Os12g39410
OsAffx.7836.1.S1_at--246--671Chr12:24211034..24211058 (25 bp)
ATGAAACTGTGCATATCGGATTCCG
LOC_Os12g39410
OsAffx.7836.1.S1_at--311--2391Chr12:24211031..24211055 (25 bp)
AAACTGTGCATATCGGATTCCGGGC
LOC_Os12g39410
OsAffx.7836.1.S1_at--676--7331Chr12:24211029..24211050 (22 bp)
GTGCATATCGGATTCCGGGCAAAGA
LOC_Os12g39410
OsAffx.7836.1.S1_at--759--6291Chr12:24210359..24210383 (25 bp)
GATGACGACTCTTGTCTTTGGACAA
LOC_Os12g39410
OsAffx.7836.1.S1_at--659--811Chr12:24209270..24209294 (25 bp)
ATGGTGATGTGGTTCGACGTCATCG
LOC_Os12g39410
OsAffx.7836.1.S1_at--159--9611Chr12:24209251..24209275 (25 bp)
TCATCGGCGGATTCCGTCCCAGCAA
LOC_Os12g39410
OsAffx.7836.1.S1_at--816--7651Chr12:24209202..24209226 (25 bp)
GGGTGACTGCGGCTATGGAGGCGGA
LOC_Os12g39410
OsAffx.7836.1.S1_at--1120--891Chr12:24209184..24209208 (25 bp)
AGGCGGAGGCTGGTACGACGGCAAG
LOC_Os12g39410
OsAffx.7836.1.S1_at--450--3831Chr12:24209155..24209179 (25 bp)
CTGCTGTGCGTGCTACAAGTGTGGC
LOC_Os12g39410
Target Sequence 
AAAGGATGGCAAAGTCGGCACCGACCTGGTACTACTGGGGAGTGATATGAAACTGTGCATATCGGATTCCGGGCAAAGAA
GGATTAAGAAAGTGATTATGATGTGGATGATGATGACGACTCTTGTCTTTGGACAAGGTGGAGAGCGTGAGATGGCGTCG
GAGAGGGTGAAAGGGATGGTGATGTGGTTCGACGTCATCGGCGGATTCCGTCCCAGCAACGGCGGGGACCACAGCTACGG
TTGGGGTGACTGCGGCTATGGAGGCGGAGGCTGGTACGACGGCAAGGAGGCTGCTGTGCGTGCTACAAGTGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis