Browse Element(s) Details


OsAffx.7871.1.S1_at

Description tigr:9640.m04204
TID=OsAffx.7871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g427708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42750Os.20602.2.S1_x_at11/1112+26529396..26531016hAT family dimerisation domain containing protein
LOC_Os12g42760Os.14561.1.S1_at11/1112+26544405..26547383Type IIB DNA topoisomerase family protein, expressed
LOC_Os12g42770OsAffx.7871.1.S1_x_at10/1112+26550292..26551574hypothetical protein
LOC_Os12g42770OsAffx.7871.1.S1_at8/1112+26550292..26551574hypothetical protein
LOC_Os12g42770Os.26789.1.A1_at1/1112+26550292..26551574hypothetical protein
LOC_Os12g42780NANA12+26553621..26553929hypothetical protein
LOC_Os12g42790NANA12+26558486..26559883retrotransposon protein, putative, unclassified
LOC_Os12g42800NANA12+26560923..26561606retrotransposon protein, putative, unclassified
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7871.1.S1_at--821--591Chr12:26551465..26551489 (25 bp)
ATGCTTCCGCAGTCGTACAACCCAG
LOC_Os12g42770
OsAffx.7871.1.S1_at--537--5011Chr12:26551457..26551481 (25 bp)
GCAGTCGTACAACCCAGTCCACGAA
LOC_Os12g42770
OsAffx.7871.1.S1_at--510--3331NONE
CACGAACCAACATAGGAACCGAGTA
NONE
OsAffx.7871.1.S1_at--747--5411NONE
GAACCAACATAGGAACCGAGTACAG
NONE
OsAffx.7871.1.S1_at--1073--4331NONE
CCAACATAGGAACCGAGTACAGTGA
NONE
OsAffx.7871.1.S1_at--490--271Chr12:26550566..26550588 (23 bp)
ATAGGAACCGAGTACAGTGATGAAA
LOC_Os12g42770
OsAffx.7871.1.S1_at--11--8171Chr12:26550563..26550587 (25 bp)
GGAACCGAGTACAGTGATGAAAATA
LOC_Os12g42770
OsAffx.7871.1.S1_at--324--791Chr12:26550490..26550514 (25 bp)
ATGTGTCTATTCCTTCTACAATCGT
LOC_Os12g42770
OsAffx.7871.1.S1_at--691--8671Chr12:26550489..26550513 (25 bp)
TGTGTCTATTCCTTCTACAATCGTC
LOC_Os12g42770
OsAffx.7871.1.S1_at--689--7451Chr12:26550488..26550512 (25 bp)
GTGTCTATTCCTTCTACAATCGTCA
LOC_Os12g42770
OsAffx.7871.1.S1_at--545--7151Chr12:26550486..26550510 (25 bp)
GTCTATTCCTTCTACAATCGTCACA
LOC_Os12g42770
Target Sequence 
ATGCTTCCGCAGTCGTACAACCCAGTCCACGAACCAACATAGGAACCGAGTACAGTGATGAAAATATGTCACCGACAATT
GCTACATCTGAAGTTCGAAATGAAACACCTTCTAATGTGTCTATTCCTTCTACAATCGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis