Browse Element(s) Details


OsAffx.7872.1.S1_x_at

Description tigr:9640.m04221
TID=OsAffx.7872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4292011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42900Os.55055.1.S1_at11/1112+26629559..26631216transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g42910NANA12+26635589..26637581Sodium/calcium exchanger protein, expressed
LOC_Os12g42920OsAffx.7872.1.S1_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42920OsAffx.7872.1.S1_x_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42930OsAffx.20095.1.S1_at11/1112+26641060..26644749hypothetical protein
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein
LOC_Os12g42970Os.11382.1.S1_at11/1112+26659916..26662907GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7872.1.S1_x_at--745--8351Chr12:26639523..26639547 (25 bp)
GGCGGCGGCACATACTCGTTCGACA
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--392--8091Chr12:26639576..26639600 (25 bp)
GGACTGGGTCTTGCCGTTCCGTGGG
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--719--10611Chr12:26639592..26639616 (25 bp)
TTCCGTGGGCAGGGCTACTTCGACG
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--392--9211Chr12:26639641..26639665 (25 bp)
TCCACAGGGAGGTCCACGGCCGCGT
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--113--4211Chr12:26639704..26639728 (25 bp)
CCCCGGAGTACAGAGAGACGCTCGA
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--97--1391Chr12:26639719..26639743 (25 bp)
AGACGCTCGACTACGACAGCGTGTC
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--1155--7211Chr12:26639747..26639771 (25 bp)
GTCGAGAAGCAAGAACCGGCGCCAA
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--301--5971Chr12:26639750..26639774 (25 bp)
GAGAAGCAAGAACCGGCGCCAACGC
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--1065--1931Chr12:26639797..26639821 (25 bp)
ACGGCATGTTCTGCGCCGTGGAGAC
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--910--10591Chr12:26639805..26639829 (25 bp)
TTCTGCGCCGTGGAGACCTGTGAGA
LOC_Os12g42920
OsAffx.7872.1.S1_x_at--711--9231Chr12:26639887..26639911 (25 bp)
TCCATGTCACGGTGTTCGGGCTCAA
LOC_Os12g42920
Target Sequence 
GGCGGCGGCACATACTCGTTCGACACCGAGCGGCGCAAGTGGCGGCGCCACGGGGACTGGGTCTTGCCGTTCCGTGGGCA
GGGCTACTTCGACGGCGAGCTGGACGCCTGGGTCGGGCTCCACAGGGAGGTCCACGGCCGCGTCTGCGCCTGCCAGGTCG
CGTCCCGCGGCGGCGCGCGGCCCCCGGAGTACAGAGAGACGCTCGACTACGACAGCGTGTCGTCGTCGAGAAGCAAGAAC
CGGCGCCAACGCGCCACGCTCACCTACATGGGCGACGGCATGTTCTGCGCCGTGGAGACCTGTGAGACGCCGCCGACATC
GTCGTCGTCGTCGGAAGGAGGTGGCGGCGGCGGCGGCGTGGAGGTCCATGTCACGGTGTTCGGGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7872.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis