Browse Element(s) Details


OsAffx.7895.1.S1_at

Description tigr:9638.m03896
TID=OsAffx.7895.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4256011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42500Os.14875.1.S1_at11/1110+22590828..22593204plastid-lipid associated protein 3, chloroplast precursor, putative, expressed
LOC_Os10g42510Os.46614.2.S1_x_at11/1110+22594459..22602989expressed protein
LOC_Os10g42520Os.46999.1.S1_at11/1110+22605218..22606346expressed protein
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed
LOC_Os10g42550Os.9645.1.S1_at10/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42550Os.53176.1.S1_at1/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42560OsAffx.7895.1.S1_at11/1110+22617981..22618376hypothetical protein
LOC_Os10g42570OsAffx.6.1.S1_at11/1110+22619210..22620469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42580OsAffx.5.1.S1_at11/1110+22620771..22622736retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42590OsAffx.4.1.S1_at11/1110+22623029..22624138retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42610Os.5318.1.S1_a_at11/1110+22634395..22635931expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7895.1.S1_at--1120--9531Chr10:22618317..22618341 (25 bp)
TCTACCGCTGCAACCGAGGGTGGTG
LOC_Os10g42560
OsAffx.7895.1.S1_at--1098--3231Chr10:22618307..22618331 (25 bp)
CAACCGAGGGTGGTGTTGTCGCCTC
LOC_Os10g42560
OsAffx.7895.1.S1_at--1034--1051Chr10:22618301..22618325 (25 bp)
AGGGTGGTGTTGTCGCCTCGCAGCC
LOC_Os10g42560
OsAffx.7895.1.S1_at--629--551Chr10:22618177..22618201 (25 bp)
ATCCGATGGTGCTTCGGCCTCCGCT
LOC_Os10g42560
OsAffx.7895.1.S1_at--766--531Chr10:22618132..22618156 (25 bp)
ATCGCGCCCGCCTTTGCCGTATGGG
LOC_Os10g42560
OsAffx.7895.1.S1_at--1162--9171Chr10:22618118..22618142 (25 bp)
TGCCGTATGGGCTGCCTCTTCGAGA
LOC_Os10g42560
OsAffx.7895.1.S1_at--578--4031Chr10:22618115..22618139 (25 bp)
CGTATGGGCTGCCTCTTCGAGAGCC
LOC_Os10g42560
OsAffx.7895.1.S1_at--655--3631Chr10:22618101..22618125 (25 bp)
CTTCGAGAGCCCTGAGACGGAGGCT
LOC_Os10g42560
OsAffx.7895.1.S1_at--908--1371Chr10:22618096..22618120 (25 bp)
AGAGCCCTGAGACGGAGGCTGCGGC
LOC_Os10g42560
OsAffx.7895.1.S1_at--564--10672Chr03:15719703..15719904 (25 bp)
TTCCTCAGCTCGACGAGTGGCCAAG
NONE
OsAffx.7895.1.S1_at--1050--9651Chr10:22618012..22618036 (25 bp)
TCAGCTCGACGAGTGGCCAAGGAGA
LOC_Os10g42560
Target Sequence 
TCTACCGCTGCAACCGAGGGTGGTGTTGTCGCCTCGCAGCCGTCGTGCCCACCTCGGCCCCAAACCACCCGCCCGCCACT
ATGGCGTCCGCCGCGTTGGCCATGGGGTTCCAGCTCCAGCGCCGCCGTCACCACCGCCGCATCCGATGGTGCTTCGGCCT
CCGCTGCCTCTCGTCCACCGTGACCATCGCGCCCGCCTTTGCCGTATGGGCTGCCTCTTCGAGAGCCCTGAGACGGAGGC
TGCGGCCGGCACCACCGACGCCGGATCGAGCTCCGCCGCCGCATCCACCTCTCATGGCCGCTTCCTCAGCTCGACGAGTG
GCCAAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis