Browse Element(s) Details


OsAffx.7999.1.S1_at

Description gb:NM_197114.1
DB_XREF= gi:37535587
TID=OsAffx.7999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0031G09.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g565701/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein
LOC_Os02g56590OsAffx.24896.1.S1_at11/112+34661647..34664054hypothetical protein
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7999.1.S1_at--961--4591NONE
GCGACGGCGAGCACAACTACGAGGC
NONE
OsAffx.7999.1.S1_at--831--4491NONE
GCCGTGCGGCAACAACATCGTGGAC
NONE
OsAffx.7999.1.S1_at--1071--8631NONE
TGGGACGCCCTTGGCCTCGACAAGA
NONE
OsAffx.7999.1.S1_at--89--3231NONE
CAAGAACGTCGGGATGGAGCACATC
NONE
OsAffx.7999.1.S1_at--499--7671NONE
GGGATTTTCCATGCACCAACTGAAT
NONE
OsAffx.7999.1.S1_at--792--1251NONE
AGATTTCCCTGCCACCATTTGGAAG
NONE
OsAffx.7999.1.S1_at--161--4331NONE
CCATTTGGAAGCAGTTCTCGGGAGT
NONE
OsAffx.7999.1.S1_at--1129--7411Chr02:34649697..34649716 (20 bp)
GTGTTTTCTTCCTGCATTCATGAGC
LOC_Os02g56570
OsAffx.7999.1.S1_at--111--10171NONE
TATCTCCATGGCAGCTCTCATTTGA
NONE
OsAffx.7999.1.S1_at--216--6131NONE
GAGTGGCAACTAGATCGTTACCCTT
NONE
OsAffx.7999.1.S1_at--858--6771NONE
GTTACCCTTTCACTACATTACAGCA
NONE
Target Sequence 
GCGACGGCGAGCACAACTACGAGGCGCCGTGCGGCAACAACATCGTGGACGCGTCGCCGGCGGTGTGGGACGCCCTTGGC
CTCGACAAGAACGTCGGGATGGAGCACATCACCTGGGGGAGAGAACCCCAGGGAAAAATTCCCGTACAGGGATTTTCCAT
GCACCAACTGAATCCCTCCCAATCTCCAGGGAAGCGCTTCCTGGTAGGGGAGATTTCCCTGCCACCATTTGGAAGCAGTT
CTCGGGAGTGGGAGATGGTATCTTGGAAGTGTTTTCTTCCTGCATTCATGAGCATCAACTATCTCCATGGCAGCTCTCAT
TTGAGAACAAAGCTGAATATCAAGGGTGAGTGGCAACTAGATCGTTACCCTTTCACTACATTACAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis