Browse Element(s) Details


OsAffx.8198.1.S1_at

Description gb:NM_196149.1
DB_XREF= gi:37533657
TID=OsAffx.8198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0091J06.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g229409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22920OsAffx.18353.1.S1_at11/1110+11576485..11578482Cf2/Cf5 disease resistance protein homolog, putative
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein
LOC_Os10g22940OsAffx.8198.2.S1_at10/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.8198.1.S1_at9/1110+11600245..11602673hypothetical protein
LOC_Os10g22940Os.45902.1.A1_x_at4/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.10222.1.S1_x_at2/1110+11600245..11602673hypothetical protein
LOC_Os10g22950Os.25048.1.S1_at8/1110+11604242..11611524anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os10g22960Os.46524.1.S1_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.1.S1_x_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.2.S1_x_at6/1110+11616411..11619646hydrolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8198.1.S1_at--252--4591Chr10:11602437..11602562 (25 bp)
GCGCTTGAACTTATTGTGGTGTGGA
LOC_Os10g22940
OsAffx.8198.1.S1_at--815--7491Chr10:11602513..11602534 (22 bp)
GTGGTGTGGATCAACCTCATTCTAG
LOC_Os10g22940
OsAffx.8198.1.S1_at--727--7951Chr10:11602506..11602530 (25 bp)
GGATCAACCTCATTCTAGGCAGTAA
LOC_Os10g22940
OsAffx.8198.1.S1_at--555--8251Chr10:11602489..11602513 (25 bp)
GGCAGTAATGGTGTGGTTCGACCAC
LOC_Os10g22940
OsAffx.8198.1.S1_at--449--6711Chr10:11602474..11602498 (25 bp)
GTTCGACCACATCTTGGCAGCGGTG
LOC_Os10g22940
OsAffx.8198.1.S1_at--443--5071Chr10:11602458..11602482 (25 bp)
GCAGCGGTGGCAACGTTCAAGCCTA
LOC_Os10g22940
OsAffx.8198.1.S1_at--810--2571Chr10:11602447..11602471 (25 bp)
AACGTTCAAGCCTATCCTAGTGTCT
LOC_Os10g22940
OsAffx.8198.1.S1_at--1041--1671Chr10:11602441..11602463 (23 bp)
AGCCTATCCTAGTGTCTACGGTGAA
LOC_Os10g22940
OsAffx.8198.1.S1_at--413--1111NONE
AGTGTCTACGGTGAATTTACAGGAT
NONE
OsAffx.8198.1.S1_at--297--3931Chr10:11600938..11600962 (25 bp)
CGGCGCAGTACCTTCGGTCAGACTG
LOC_Os10g22940
OsAffx.8198.1.S1_at--461--9231NONE
TCCATCGATTTCAAGGTTTATACAC
NONE
Target Sequence 
GCGCTTGAACTTATTGTGGTGTGGATCAACCTCATTCTAGGCAGTAATGGTGTGGTTCGACCACATCTTGGCAGCGGTGG
CAACGTTCAAGCCTATCCTAGTGTCTACGGTGAATTTACAGGATACTGCTGTGATTTTATGTGGTCCGGTCAGACCGGGC
AGGGGTTGCCGGTCAGACCGGCGGTGATCGAGCGGTCGGACCGGCCAGCCCGCGGTGACTCGATGTCTCGGAAGAGTATT
TGCGGTGATGGACCGGGAGTCGGCTTGGGGATAAGACGACCGCACCGACGGTCAGACCGGCGGCATTGCGGCGGTCAGAC
CGGCGGGCACACGGCGGTTAGACCGGCGGCGACAGGAGTCGGCAGCCGGCGTTCTCGGCGGTACGACCGATCGATCTACA
TCGGTCAGACCGATGTTCATCAGGCGGTCAGACCGGCGCAGTACCTTCGGTCAGACTGCGATCCATCGATTTCAAGGTTT
ATACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis