Browse Element(s) Details


OsAffx.8267.1.S1_at

Description gb:NM_195834.1
DB_XREF= gi:37533027
TID=OsAffx.8267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g192409/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8267.1.S1_at--710--4271Chr10:9465774..9465798 (25 bp)
CCTGTTTCTCTTCACGAGAGCAGGG
NONE
OsAffx.8267.1.S1_at--1126--2711Chr10:9465817..9465841 (25 bp)
AAGCACGTCGCATAGCAGCGGTGGT
NONE
OsAffx.8267.1.S1_at--334--7211Chr10:9465952..9465976 (25 bp)
GTCGTCACTGCCACAAAGCACGTCG
LOC_Os10g19240
OsAffx.8267.1.S1_at--175--2351Chr10:9465966..9465990 (25 bp)
AAAGCACGTCGCAGAGTGGCAGCGC
LOC_Os10g19240
OsAffx.8267.1.S1_at--269--9351Chr10:9465974..9465998 (25 bp)
TCGCAGAGTGGCAGCGCGACAGTAC
LOC_Os10g19240
OsAffx.8267.1.S1_at--372--1631Chr10:9466005..9466029 (25 bp)
AGCGGCTGTGGACCGGTCTCCATCA
LOC_Os10g19240
OsAffx.8267.1.S1_at--973--9492Chr11:1415784..1415914 (24 bp)
TCTCCATCACGCCAATGCTGTCTTT
NONE
OsAffx.8267.1.S1_at--995--2991Chr10:9466034..9466058 (25 bp)
AATGCTGTCTTTGCACCGGAATCGT
LOC_Os10g19240
OsAffx.8267.1.S1_at--920--10731Chr10:9466044..9466068 (25 bp)
TTGCACCGGAATCGTGCTCCGCGAG
LOC_Os10g19240
OsAffx.8267.1.S1_at--438--9691Chr10:9466078..9466102 (25 bp)
TCACTGCACCGCGTCAAGAAGGAAA
LOC_Os10g19240
OsAffx.8267.1.S1_at--833--4711Chr10:9466148..9466172 (25 bp)
GCTGGCACCGGCAACGATGCCACGG
LOC_Os10g19240
Target Sequence 
CCTGTTTCTCTTCACGAGAGCAGGGGCCAGATTGTCGGCCGCGAAGCACGTCGCATAGCAGCGGTGGTGGCAGCCGCAAC
AACAGCTCGATGGCGGAGCTCGAGGGAGTGGGCAGCGGGCCGGAGCGATGACTGCAGTCGGGAGGGCGGCGATGGAGCCG
ACGGCGGTGGCCACCACCGTCGTCACTGCCACAAAGCACGTCGCAGAGTGGCAGCGCGACAGTACGGCGGCAGCGGCTGT
GGACCGGTCTCCATCACGCCAATGCTGTCTTTGCACCGGAATCGTGCTCCGCGAGCACTCCTCATCACTGCACCGCGTCA
AGAAGGAAAGAGAGGGAGAGAGAAGGGGTTGCTACCGCCCTCCTGGCCGCCGGCGCTGGCACCGGCAACGATGCCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis