Browse Element(s) Details


OsAffx.8319.1.S1_x_at

Description gb:NM_195589.1
DB_XREF= gi:37532537
TID=OsAffx.8319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBb0036B06.23), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1665010/11retrotransposon, putative, centromere-specific
LOC_Os06g202803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g284003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g302702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g244701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16610OsAffx.20566.1.S1_at10/1110+7952847..7953843hypothetical protein
LOC_Os10g16620OsAffx.30430.2.S1_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16620OsAffx.30430.1.S1_s_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16630NANA10+7959963..7960580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16640Os.7089.2.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16640Os.7089.1.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16650OsAffx.8319.1.S1_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16650OsAffx.8319.1.S1_x_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16660NANA10+7980816..7981264retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.31312.5.S1_x_at3/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.31312.2.S1_x_at2/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.28943.1.S1_x_at1/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16680NANA10+7986202..7986573retrotransposon protein, putative, unclassified
LOC_Os10g16690OsAffx.20565.1.S1_at11/1110+7989325..7992182retrotransposon protein, putative, unclassified
LOC_Os10g16700NANA10+7992682..7993329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16720Os.27691.1.S1_x_at1/1110+7998400..8003916retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8319.1.S1_x_at--279--3851Chr10:7979003..7979027 (25 bp)
CTGACTTGCGAAAATCGAAATTGAT
LOC_Os10g16650
OsAffx.8319.1.S1_x_at--170--5611Chr10:7978987..7979011 (25 bp)
GAAATTGATGCCCAGAGCTGATGGT
LOC_Os10g16650
OsAffx.8319.1.S1_x_at--78--211Chr10:7978921..7978940 (20 bp)
ATTTGCCTGCAGATTATAAGTTGCT
LOC_Os10g16650
OsAffx.8319.1.S1_x_at--952--5031NONE
GCAGATTATAAGTTGCTTGTTCATC
NONE
OsAffx.8319.1.S1_x_at--204--67511Chr11:14101905..14101929 (25 bp)
GTTCATCTTGTTCTTGCTGGTTCTC
NONE
OsAffx.8319.1.S1_x_at--290--2951Chr10:7977992..7978016 (25 bp)
AAGGCGCAACATCTCTGGATAGTTG
LOC_Os10g16650
OsAffx.8319.1.S1_x_at--307--2098Chr11:14101876..14102002 (25 bp)
ACATCTCTGGATAGTTGTAGTCGGA
NONE
OsAffx.8319.1.S1_x_at--219--539Chr10:4519021..4519045 (25 bp)
ATCGACTTATCCCTCTCATCGAAAG
NONE
OsAffx.8319.1.S1_x_at--1126--10131Chr10:7977931..7977955 (25 bp)
TATCCCTCTCATCGAAAGACTGGGA
LOC_Os10g16650
OsAffx.8319.1.S1_x_at--885--4071Chr10:7977919..7977943 (25 bp)
CGAAAGACTGGGACACCCTCGAGCA
LOC_Os10g16650
OsAffx.8319.1.S1_x_at--1136--3351Chr10:7977906..7977930 (25 bp)
CACCCTCGAGCACATCAAATACAGA
LOC_Os10g16650
Target Sequence 
CTGACTTGCGAAAATCGAAATTGATGCCCAGAGCTGATGGTCCATTTAAAGTGTTAGCCAAAATTAATGAGAATGCATAT
AAGCTTGATTTGCCTGCAGATTATAAGTTGCTTGTTCATCTTGTTCTTGCTGGTTCTCGATTGCTCGCAGGAACAAATAC
CCTCGTGGTTGGGCTGATCGTGCATCCGTCGAGATTCACGACCACCTCTGGAGTTGGTGTAACGATTGCTAAGGCGCAAC
ATCTCTGGATAGTTGTAGTCGGATCGCCAACGTCACTCCATCCAATCGACTTATCCCTCTCATCGAAAGACTGGGACACC
CTCGAGCACATCAAATACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8319.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis