Browse Element(s) Details


OsAffx.8356.1.S1_at

Description tigr:9638.m01215
TID=OsAffx.8356.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1378011/11hypothetical protein
LOC_Os08g136604/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13740NANA10+7232752..7235090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13760NANA10+7241671..7245347hypothetical protein
LOC_Os10g13770Os.27088.1.A1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.2.S1_x_at4/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770Os.46012.3.S1_x_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13770OsAffx.12167.1.A1_at1/1110+7247509..7254547Transposable element protein, putative, MuDR
LOC_Os10g13780OsAffx.8356.1.S1_x_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13780OsAffx.8356.1.S1_at11/1110+7256708..7257714hypothetical protein
LOC_Os10g13790OsAffx.20604.1.S1_at11/1110+7257955..7258896hypothetical protein
LOC_Os10g13800Os.25439.1.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_x_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13800Os.25439.2.S1_at11/1110+7261230..7264144Ufm1-conjugating enzyme 1, putative, expressed
LOC_Os10g13810Os.31415.1.S1_at11/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13810OsAffx.8676.1.S1_at1/1110+7264476..7268612Glycosyltransferase family 43 protein, expressed
LOC_Os10g13820OsAffx.6667.1.S1_at6/1110+7269688..7271350hypothetical protein
LOC_Os10g13820Os.27691.2.S1_at1/1110+7269688..7271350hypothetical protein
LOC_Os10g13830Os.46553.1.S1_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13830Os.46553.2.S1_x_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8356.1.S1_at--377--1391Chr10:7256793..7256817 (25 bp)
AGACTATCCAGGGACAACAACTAAT
LOC_Os10g13780
OsAffx.8356.1.S1_at--742--571Chr10:7256798..7256818 (21 bp)
ATCCAGGGACAACAACTAATGCGTG
LOC_Os10g13780
OsAffx.8356.1.S1_at--323--3471Chr10:7256801..7256935 (25 bp)
CAGGGACAACAACTAATGCGTGGTT
LOC_Os10g13780
OsAffx.8356.1.S1_at--295--7632Chr10:7256803..7256937 (25 bp)
GGGACAACAACTAATGCGTGGTTCC
LOC_Os10g13780
OsAffx.8356.1.S1_at--533--5617Chr10:7256805..7256939 (25 bp)
GACAACAACTAATGCGTGGTTCCGG
LOC_Os10g13780
OsAffx.8356.1.S1_at--1128--2456Chr10:7256808..7256942 (25 bp)
AACAACTAATGCGTGGTTCCGGCTA
LOC_Os10g13780
OsAffx.8356.1.S1_at--1090--2176Chr10:7256809..7256943 (25 bp)
ACAACTAATGCGTGGTTCCGGCTAT
LOC_Os10g13780
OsAffx.8356.1.S1_at--236--3276Chr10:7256810..7256944 (25 bp)
CAACTAATGCGTGGTTCCGGCTATA
LOC_Os10g13780
OsAffx.8356.1.S1_at--741--7511Chr10:7256965..7256989 (25 bp)
GTGGAGGATTACTACGATGGGATTC
LOC_Os10g13780
OsAffx.8356.1.S1_at--1112--6151Chr10:7256968..7256992 (25 bp)
GAGGATTACTACGATGGGATTCAGG
LOC_Os10g13780
OsAffx.8356.1.S1_at--490--4471Chr10:7257610..7257634 (25 bp)
GCCGAACCCGGGACAGCTCCTTTCG
LOC_Os10g13780
Target Sequence 
AGACTATCCAGGGACAACAACTAATGCGTGGTTCCGGCTATAGCTCTATGATGTACCCGAACGTGGAGGATTACTACGAT
GGGATTCAGGGCTGTCACCACCTGCCATCTACCTCTGACAAATACGTGGGATACACAACAAACAAAGCCGAACCCGGGAC
AGCTCCTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis