Browse Element(s) Details


OsAffx.8417.1.S1_at

Description gb:NM_195191.1
DB_XREF= gi:37531741
TID=OsAffx.8417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNAb0022I16.5), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1035011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10300NANA10+5423273..5428084retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10310NANA10+5430254..5430610hypothetical protein
LOC_Os10g10320OsAffx.30374.2.S1_at11/1110+5436317..5437198hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_s_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.1.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8417.1.S1_at--1--7151Chr10:5454447..5454471 (25 bp)
GTCTTCACCAGTGCACTTTGGCAAG
LOC_Os10g10350
OsAffx.8417.1.S1_at--1030--2951Chr10:5454911..5454935 (25 bp)
AATGGCTCGACGATCCTGTCAGAAG
LOC_Os10g10350
OsAffx.8417.1.S1_at--191--2811Chr10:5454933..5454957 (25 bp)
AAGTTGAGCTTTCGCTTCTTTGGTC
LOC_Os10g10350
OsAffx.8417.1.S1_at--65--8611Chr10:5454953..5454977 (25 bp)
TGGTCCCTATAAGGCGTTAGCTCAT
LOC_Os10g10350
OsAffx.8417.1.S1_at--974--6071Chr10:5455016..5455040 (25 bp)
GAGTTTGATCCACCTAGTCGTGCAT
LOC_Os10g10350
OsAffx.8417.1.S1_at--138--9431Chr10:5455033..5455057 (25 bp)
TCGTGCATGCATCCCTGTTGAAAAA
LOC_Os10g10350
OsAffx.8417.1.S1_at--778--431Chr10:5455090..5455114 (25 bp)
ATCTTCCCCTTAACTGCTTTGATGA
LOC_Os10g10350
OsAffx.8417.1.S1_at--430--6571Chr10:5455113..5455137 (25 bp)
GATTCTACAGTTGTGCAGCCCGAAG
LOC_Os10g10350
OsAffx.8417.1.S1_at--704--571Chr10:5455140..5455164 (25 bp)
ATCCTTCGCCGACAGTTGATCAAGC
LOC_Os10g10350
OsAffx.8417.1.S1_at--1151--3091Chr10:5455197..5455221 (25 bp)
AATATGGACTGGTCTTCCTGCTACT
LOC_Os10g10350
OsAffx.8417.1.S1_at--988--2691Chr10:5455259..5455283 (25 bp)
AAGCTATCAAACCAACTACCTATCT
LOC_Os10g10350
Target Sequence 
GTCTTCACCAGTGCACTTTGGCAAGAGTTGTTTCGTTTGGCAGATGTTAAGTTGAATATGAGCTCCTCATATCATCCACA
AACTGATGGATTTGGTTACAGAATAGAGCACACCTCAATGAGATACTCCACCAACAACTTCTTAGAGATGACAATGGCTC
GACGATCCTGTCAGAAGTTGAGCTTTCGCTTCTTTGGTCCCTATAAGGCGTTAGCTCATGTTGGAGCAGTGGCATATCAT
CTAGAACTGCCAGAAGGGAGTTTGATCCACCTAGTCGTGCATGCATCCCTGTTGAAAAAAGCTCTGAAGCCTAACACACC
AGAAAGCGCAGATCTTCCCCTTAACTGCTTTGATGATTCTACAGTTGTGCAGCCCGAAGCCATCCTTCGCCGACAGTTGA
TCAAGCGTGGCAAGGCAGTTGTACATTATGAGTGGTGCAATATGGACTGGTCTTCCTGCTACTCTGGCGACATGGGAGAA
CCTACGACAGCTGAAACAAGAAGCTATCAAACCAACTACCTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis