Browse Element(s) Details


OsAffx.8429.1.S1_at

Description tigr:9638.m00852
TID=OsAffx.8429.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0979010/11expressed protein
LOC_Os05g227701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09740OsAffx.6623.1.S1_at11/1110+5035196..5036834hypothetical protein
LOC_Os10g09750OsAffx.30361.1.S1_at10/1110+5041443..5042093hypothetical protein
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8429.1.S1_at--998--10071NONE
TAGGGATGGGCCTGACAGCCATCCA
NONE
OsAffx.8429.1.S1_at--870--573Chr10:5062185..5062209 (25 bp)
ATCCACCCGATATCTATCCCGATTT
LOC_Os10g09790
OsAffx.8429.1.S1_at--247--453Chr10:5075258..5075282 (25 bp)
ATCTATCCCGATTTTGTTTCTATAA
NONE
OsAffx.8429.1.S1_at--380--2891Chr10:5062241..5062265 (25 bp)
AAGGGTGCGCTTATATCTGTACTCC
LOC_Os10g09790
OsAffx.8429.1.S1_at--890--4571Chr10:5062247..5062271 (25 bp)
GCGCTTATATCTGTACTCCGCATAG
LOC_Os10g09790
OsAffx.8429.1.S1_at--951--10191Chr10:5062252..5062271 (20 bp)
TATATCTGTACTCCGCATAGCAGTC
LOC_Os10g09790
OsAffx.8429.1.S1_at--56--4971Chr10:5062834..5062853 (20 bp)
GCATAGCAGTCTCCGTTCTCAACGT
LOC_Os10g09790
OsAffx.8429.1.S1_at--218--3431Chr10:5062835..5062859 (25 bp)
CAGTCTCCGTTCTCAACGTCAAGGC
LOC_Os10g09790
OsAffx.8429.1.S1_at--426--3191Chr10:5062935..5062959 (25 bp)
CAAGTACGCGCTCACCGATTATGTC
LOC_Os10g09790
OsAffx.8429.1.S1_at--1135--9671Chr10:5062946..5062970 (25 bp)
TCACCGATTATGTCGTCCTCGACAC
LOC_Os10g09790
OsAffx.8429.1.S1_at--898--372Chr10:5062982..5063006 (25 bp)
ATCAACCAGATTGGATGCAGATGGA
LOC_Os10g09790
Target Sequence 
TAGGGATGGGCCTGACAGCCATCCACCCGATATCTATCCCGATTTTGTTTCTATAAGTCGGTTGAGGAGAGAAGGGAAGG
GTGCGCTTATATCTGTACTCCGCATAGCAGTCTCCGTTCTCAACGTCAAGGCGTTGGTTCCCGTCACCCTCGACCTCACT
GCCGGCAACTACACCCGCTGGCGCGGCCTCTTCTTCGTCACCCTCGGCAAGTACGCGCTCACCGATTATGTCGTCCTCGA
CACCCCGCCGACCAATCAACCAGATTGGATGCAGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis