Browse Element(s) Details


OsAffx.8461.1.S1_at

Description gb:NM_195024.1
DB_XREF= gi:37531407
TID=OsAffx.8461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBb0015J03.8), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0845011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08400OsAffx.6603.1.S1_at6/1110+4328623..4330073hypothetical protein
LOC_Os10g08410NANA10+4335216..4336940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08420OsAffx.31892.2.S1_at2/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08420OsAffx.31892.2.S1_x_at1/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08430OsAffx.30337.1.S1_at11/1110+4347105..4347566hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_x_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.2.S1_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_at9/1110+4350122..4350574hypothetical protein
LOC_Os10g08450OsAffx.8461.1.S1_at11/1110+4354817..4358316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08460OsAffx.30338.2.S1_x_at11/1110+4358597..4361358hypothetical protein
LOC_Os10g08474Os.27715.1.S1_a_at11/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08474OsAffx.15863.1.S1_at1/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08490NANA10+4371504..4371790hypothetical protein
LOC_Os10g08500OsAffx.30340.1.S1_x_at11/1110+4378377..4379063hypothetical protein
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8461.1.S1_at--501--10331Chr10:4357546..4357570 (25 bp)
TTTAGCTACTGGATGCAAGCCTAGG
LOC_Os10g08450
OsAffx.8461.1.S1_at--573--2651Chr10:4357562..4357586 (25 bp)
AAGCCTAGGGTCTTGTCATACAATT
LOC_Os10g08450
OsAffx.8461.1.S1_at--1064--2951Chr10:4357598..4357622 (25 bp)
AATGGCTATCGTTTTAGGTCCGAGA
LOC_Os10g08450
OsAffx.8461.1.S1_at--859--2871Chr10:4357642..4357666 (25 bp)
AAGGTTGACCACAGTAAACTCAGGG
LOC_Os10g08450
OsAffx.8461.1.S1_at--234--6871Chr10:4357671..4357695 (25 bp)
GTTTGTCCTCGTTCACCTCTGATGA
LOC_Os10g08450
OsAffx.8461.1.S1_at--1014--6271Chr10:4357691..4357715 (25 bp)
GATGACCAGCAACTTGACTACTATG
LOC_Os10g08450
OsAffx.8461.1.S1_at--1031--2531Chr10:4357737..4357761 (25 bp)
AACTAACATTTGATGCTGGCCGGAA
LOC_Os10g08450
OsAffx.8461.1.S1_at--322--291Chr10:4357769..4357793 (25 bp)
ATAGTGCTGCTCCAATGCCGTTGGT
LOC_Os10g08450
OsAffx.8461.1.S1_at--214--3011Chr10:4357782..4357806 (25 bp)
AATGCCGTTGGTTTGACCCCATTCG
LOC_Os10g08450
OsAffx.8461.1.S1_at--684--5131Chr10:4357809..4357833 (25 bp)
GCAAACGATCCACACCAACTTTGGG
LOC_Os10g08450
OsAffx.8461.1.S1_at--762--5431Chr10:4357874..4357898 (25 bp)
GAACCATTTGCTATGGCTCATCAAG
LOC_Os10g08450
Target Sequence 
TTTAGCTACTGGATGCAAGCCTAGGGTCTTGTCATACAATTCTTATGATATTAATGGCTATCGTTTTAGGTCCGAGAAAT
ATGAAAAATCTCGTAGAAGGTTGACCACAGTAAACTCAGGGGTTTGTTTGTCCTCGTTCACCTCTGATGACCAGCAACTT
GACTACTATGGTGTCATCGAAGACATTATAAAACTAACATTTGATGCTGGCCGGAAGATTGAAATAGTGCTGCTCCAATG
CCGTTGGTTTGACCCCATTCGGGGCAAACGATCCACACCAACTTTGGGAATGATAGAAATAAAGTCTACCTCAAAATTAA
CAAACTTTGAACCATTTGCTATGGCTCATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis