Browse Element(s) Details


OsAffx.8572.1.S1_s_at

Description gb:NM_194532.1
DB_XREF= gi:37530423
TID=OsAffx.8572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative mutator-like transposase (OSJNBa0065H03.14), mRNA.
PROD=putative mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4158011/11transposase, putative
LOC_Os11g0708011/11transposon protein, putative, Mutator sub-class
LOC_Os10g0179011/11transposon protein, putative, Mutator sub-class
LOC_Os11g177709/11transposon protein, putative, Mutator sub-class
LOC_Os04g330106/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41560OsAffx.23622.1.S1_at11/111+23849278..23850404hypothetical protein
LOC_Os01g41570OsAffx.23623.1.S1_x_at11/111+23857442..23864963PP-loop family protein
LOC_Os01g41570OsAffx.23623.1.S1_at10/111+23857442..23864963PP-loop family protein
LOC_Os01g41580OsAffx.8572.1.S1_s_at11/111+23872400..23873785transposase, putative
LOC_Os01g41580OsAffx.8572.1.S1_at5/111+23872400..23873785transposase, putative
LOC_Os01g41590NANA1+23874092..23875942hypothetical protein
LOC_Os01g41600Os.18250.1.S1_at11/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.28171.1.S1_at4/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.24197.1.S1_x_at1/111+23878818..23881100expressed protein
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8572.1.S1_s_at--816--2836Chr05:25089357..25089381 (25 bp)
AAGTACATTCTTGATGCCAGGGAGA
NONE
OsAffx.8572.1.S1_s_at--353--7656Chr06:4215714..4216007 (25 bp)
GGGAGATGCCTATTTTGTCTATGCT
NONE
OsAffx.8572.1.S1_s_at--617--2016Chr05:25089452..25089476 (25 bp)
ACTAGAAAGGAATTGGCCATGTGGC
NONE
OsAffx.8572.1.S1_s_at--29--8315Chr11:9922868..9922892 (25 bp)
GGCTAATACATGCTATGTTTTGCCT
LOC_Os11g17770
OsAffx.8572.1.S1_s_at--372--5394Chr05:25089992..25090016 (25 bp)
GAAGCAACCTATGCAGCAAATGGCG
NONE
OsAffx.8572.1.S1_s_at--762--5136Chr05:25090007..25090031 (25 bp)
GCAAATGGCGACTTCATCAATTGTT
NONE
OsAffx.8572.1.S1_s_at--526--7135Chr05:25090047..25090153 (25 bp)
GTCATCACTCGGGAACCTGTCATCA
NONE
OsAffx.8572.1.S1_s_at--150--2016Chr05:25090053..25090159 (25 bp)
ACTCGGGAACCTGTCATCACTCAGG
NONE
OsAffx.8572.1.S1_s_at--734--915Chr05:25090422..25090446 (25 bp)
AGGCTGCTAGCAACCATCAAGAAAG
NONE
OsAffx.8572.1.S1_s_at--133--1355Chr05:25090468..25090492 (25 bp)
AGAGTCTGCTTTCATTGCTACTAAT
NONE
OsAffx.8572.1.S1_s_at--428--8196Chr05:25090554..25090578 (25 bp)
GGAAGAGAAGTGCAGCACCCAAGAA
NONE
Target Sequence 
AAGTACATTCTTGATGCCAGGGAGATGCCTATTTTGTCTATGCTTGAGAGGATTAGAAATCAGATCATGAACAGGTTGTA
CACCAAGCAAAAAGAACTAGAAAGGAATTGGCCATGTGGCCTCTGCCCAAAAATAAAACGGAAGGTCGAGAAAAATACAG
AGATGGCTAATACATGCTATGTTTTGCCTGCTGGGATGGGAGCATTTCAGAGGAAGGCTGACTTAAAACTTCAGAAGCAA
CCTATGCAGCAAATGGCGACTTCATCAATTGTTGATTCAGAAGAGCTTGTCATCACTCGGGAACCTGTCATCACTCAGGA
AATGCACCTGCTTAGCATACCCCAACAAAATTCTAACTATCTGAGTTCATCTGTGGTGGAAGCTTTTATTAAGGAGGCTG
CTAGCAACCATCAAGAAAGGGTGAATCCAGGAGCAGTGCTAGAGTCTGCTTTCATTGCTACTAATAGGAGAGAAGGGGTT
CAACCACCACTAACCACATCAACCAAACAAGGCAGGGCCACATTGAGGAAGAGAAGTGCAGCACCCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8572.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis