Browse Element(s) Details


OsAffx.8775.1.S1_at

Description gb:XM_353970.1
DB_XREF= gi:35189373
GEN=OJ1612_A04.7
TID=OsAffx.8775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g362306/11NPH3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein
LOC_Os07g36230Os.27111.1.S1_at11/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36230OsAffx.8775.1.S1_at6/117+21651560..21655665NPH3 family protein, expressed
LOC_Os07g36240OsAffx.28775.1.S1_x_at11/117+21656307..21657052hypothetical protein
LOC_Os07g36240OsAffx.28775.2.S1_at7/117+21656307..21657052hypothetical protein
LOC_Os07g36250Os.9780.1.S1_at11/117+21666526..21670201Peptide chain release factor 2, putative, expressed
LOC_Os07g36260Os.39859.1.S1_at11/117+21673087..21675683transposon protein, putative, Pong sub-class, expressed
LOC_Os07g36270NANA7+21679126..21683366retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8775.1.S1_at--582--9551Chr07:21651482..21651503 (22 bp)
TCTTACCCAGGCACATTGCACAAAT
NONE
OsAffx.8775.1.S1_at--1006--9931Chr07:21651482..21651506 (25 bp)
TACCCAGGCACATTGCACAAATATG
NONE
OsAffx.8775.1.S1_at--725--251Chr07:21651502..21651526 (25 bp)
ATATGCAATGTGCAAGGTGGGTAAA
NONE
OsAffx.8775.1.S1_at--1103--2251Chr07:21651537..21651561 (25 bp)
AAATCAAGAACCCAGCCTTACATAT
NONE
OsAffx.8775.1.S1_at--602--1671Chr07:21651550..21651574 (25 bp)
AGCCTTACATATTCCCCAAAGCTCT
NONE
OsAffx.8775.1.S1_at--983--9011Chr07:21651580..21651604 (25 bp)
TGCAAACTCTCCACTTGCAGGGTGG
LOC_Os07g36230
OsAffx.8775.1.S1_at--307--2551Chr07:21651584..21651608 (25 bp)
AACTCTCCACTTGCAGGGTGGCAGA
LOC_Os07g36230
OsAffx.8775.1.S1_at--659--9491Chr07:21651587..21651611 (25 bp)
TCTCCACTTGCAGGGTGGCAGAGGC
LOC_Os07g36230
OsAffx.8775.1.S1_at--972--8491Chr07:21651602..21651626 (25 bp)
TGGCAGAGGCTGTCAGTAGAGCTCA
LOC_Os07g36230
OsAffx.8775.1.S1_at--1053--7091Chr07:21651613..21651637 (25 bp)
GTCAGTAGAGCTCAGGATCCACCAA
LOC_Os07g36230
OsAffx.8775.1.S1_at--1095--991Chr07:21651626..21651650 (25 bp)
AGGATCCACCAACTTCTTTGGCTGG
LOC_Os07g36230
Target Sequence 
TCTTACCCAGGCACATTGCACAAATATGCAATGTGCAAGGTGGGTAAAGGGCAGGGAGAAATCAAGAACCCAGCCTTACA
TATTCCCCAAAGCTCTCTCCCTGCAAACTCTCCACTTGCAGGGTGGCAGAGGCTGTCAGTAGAGCTCAGGATCCACCAAC
TTCTTTGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis