Browse Element(s) Details


OsAffx.8853.1.S1_at

Description gb:NM_194041.1
DB_XREF= gi:34915165
GEN=P0697D09.22
TID=OsAffx.8853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0697D09.22 (P0697D09.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g238701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23820NANA7+13451734..13454998retrotransposon protein, putative, unclassified
LOC_Os07g23830NANA7+13455625..13458993retrotransposon protein, putative, unclassified
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified
LOC_Os07g23850Os.54178.1.S1_at1/117+13468705..13469514Hevamine A precursor, putative
LOC_Os07g23860OsAffx.5418.1.S1_at11/117+13470767..13472793hypothetical protein
LOC_Os07g23870OsAffx.5419.1.S1_at11/117+13477296..13481653hypothetical protein
LOC_Os07g23870OsAffx.8853.1.S1_at1/117+13477296..13481653hypothetical protein
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8853.1.S1_at--313--10691Chr01:14932240..14932264 (25 bp)
TTGCCAGACGGCTTTGTTGACCCAA
NONE
OsAffx.8853.1.S1_at--650--8931Chr01:14932223..14932247 (25 bp)
TGACCCAACAAAACCCTTATACGAG
NONE
OsAffx.8853.1.S1_at--218--7692Chr07:13479510..13479534 (25 bp)
GGGTTTCCACGTTGAGCTTCGGAAT
LOC_Os07g23870
OsAffx.8853.1.S1_at--632--8931Chr01:14932169..14932193 (25 bp)
TGACCGGCCAACTGCTATCATGTGT
NONE
OsAffx.8853.1.S1_at--948--2831Chr01:14932136..14932160 (25 bp)
AATGTCTTACGTATACACCTACCCG
NONE
OsAffx.8853.1.S1_at--829--1791Chr01:14932116..14932140 (25 bp)
ACCCGTTAGTGGTGTATCGTGCAAC
NONE
OsAffx.8853.1.S1_at--367--831Chr01:14932079..14932103 (25 bp)
ATGGTTATGCACCTACTGTGTTCCA
NONE
OsAffx.8853.1.S1_at--601--8151Chr01:14932044..14932068 (25 bp)
GGAAATTCATTCGTCCTGAGGTTTT
NONE
OsAffx.8853.1.S1_at--769--2951Chr01:14931910..14931934 (25 bp)
AAGGCCTTAGCCAGTGATTGTTCTC
NONE
OsAffx.8853.1.S1_at--808--10411Chr01:14931810..14931891 (25 bp)
TTATCATGGTACTTGATCCACCCTG
NONE
OsAffx.8853.1.S1_at--254--3831Chr01:14931700..14931724 (25 bp)
CTGCGTTCGTTGGATTTCTTGGGAC
NONE
Target Sequence 
TTGCCAGACGGCTTTGTTGACCCAACAAAACCCTTATACGAGGACAGGGGTTTCCACGTTGAGCTTCGGAATGACCGGCC
AACTGCTATCATGTGTGACCTCGAAATGTCTTACGTATACACCTACCCGTTAGTGGTGTATCGTGCAACTTTTATTGCTG
CATGGTTATGCACCTACTGTGTTCCAGTAGAGGAGGGGAAATTCATTCGTCCTGAGGTTTTTGCTATGGTAGTGGAAATT
GCTCAGGGTAGCCGTCGAGCCATTGGCATTACCAGCATGGCATTTTTATATCGTGCCCTTAATAATATACACCACTACGT
GGCGGCACGGAAGGCCTTAGCCAGTGATTGTTCTCTATTTGTACTAGACCATTTTATCATGGTACTTGATCCACCCTGTA
TTGTGGACTTCAGGAACTATAGGTCCAAGGATTTTAAGAGTGAACATGAATTATTTTGGGATTTCAACCAGGATGGCAGT
GGTCTGCGTTCGTTGGATTTCTTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis