Browse Element(s) Details


OsAffx.8898.1.S1_at

Description gb:NM_193855.1
DB_XREF= gi:34914793
GEN=B1039D07.21
TID=OsAffx.8898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1039D07.21 (B1039D07.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2758011/11transposon protein, putative, Pong sub-class
LOC_Os05g345405/11Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g436301/11transposon protein, putative, Pong sub-class
LOC_Os12g125001/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27560NANA1+15707967..15708876hypothetical protein
LOC_Os01g27570OsAffx.27622.1.S1_x_at10/111+15711763..15712312hypothetical protein
LOC_Os01g27570OsAffx.27622.2.S1_at1/111+15711763..15712312hypothetical protein
LOC_Os01g27580OsAffx.8898.1.S1_at11/111+15714319..15715693transposon protein, putative, Pong sub-class
LOC_Os01g27590Os.28858.1.S1_at11/111+15716613..15718906transposon protein, putative, Pong sub-class, expressed
LOC_Os01g27600Os.31536.1.S1_at11/111+15720304..15722634expressed protein
LOC_Os01g27620OsAffx.2097.1.S1_at10/111+15732147..15733119hypothetical protein
LOC_Os01g27630Os.16500.1.S1_at10/111+15737644..15738926Glutathione S-transferase I, putative, expressed
LOC_Os01g27640OsAffx.24866.1.S1_at10/111+15739981..15742657retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0048227biological_processplasma membrane to endosome transport
GO:0005093molecular_functionRab GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8898.1.S1_at--816--5391Chr01:15715526..15715550 (25 bp)
GAAGCATCGACTGTACATCGCCGAC
LOC_Os01g27580
OsAffx.8898.1.S1_at--400--7611Chr01:15714812..15714836 (25 bp)
GGGAATCTCCTACGGTACACTATAC
LOC_Os01g27580
OsAffx.8898.1.S1_at--161--5674Chr12:6886993..6887017 (25 bp)
GACATGGGTTACTATCTTGCCGATA
LOC_Os12g12500
OsAffx.8898.1.S1_at--174--9771Chr01:15714706..15714730 (25 bp)
TAATGCCCCTCAATCAGCGGAAGAT
LOC_Os01g27580
OsAffx.8898.1.S1_at--715--4952Chr05:20395487..20395511 (25 bp)
GCATTTGGTGTTCTGCAATCACGCT
LOC_Os05g34540
OsAffx.8898.1.S1_at--377--4132Chr05:20395508..20395532 (25 bp)
CGCTTTGATATTGTTCGTCGACCAG
LOC_Os05g34540
OsAffx.8898.1.S1_at--817--9411Chr01:15714598..15714622 (25 bp)
TCGTCGACCAGCACGCTTATGGAAG
LOC_Os01g27580
OsAffx.8898.1.S1_at--597--6491Chr01:15714457..15714481 (25 bp)
GATAGTGATCCCACCAGAAGTGCGT
LOC_Os01g27580
OsAffx.8898.1.S1_at--95--8852Chr05:20395693..20395717 (25 bp)
TGATGACCCTAATCCAAGCTTTGCA
LOC_Os05g34540
OsAffx.8898.1.S1_at--1073--2692Chr05:20395708..20395732 (25 bp)
AAGCTTTGCAGAGGCACTTCGTAGA
LOC_Os05g34540
OsAffx.8898.1.S1_at--338--8312Chr05:20395738..20395762 (25 bp)
GGCTATCAAAGCTCGACCAACACAT
LOC_Os05g34540
Target Sequence 
GAAGCATCGACTGTACATCGCCGACGTCGACAGAGTGGACCAAGGAGCAATAAAAGGGGAATCTCCTACGGTACACTATA
CTGTAATTGGAAATCAATATGACATGGGTTACTATCTTGCCGATAAAATATATCCAGAATGGGCAGTATTCGTGAAGACA
GTTAATGCCCCTCAATCAGCGGAAGATAAAACATTTTCGTTGAGGCAAGAAGGGGTGAGGAAAGATGTCGAGTGTGCATT
TGGTGTTCTGCAATCACGCTTTGATATTGTTCGTCGACCAGCACGCTTATGGAAGCAAGGAGACGTTATCAACATTATGC
AAGCTTGTGTTATCCTTCACAATATGATAGTTGAAGATGAGAAGGACTCAGTTAGGGATGTCTTGGATTTGAATGAAAAT
CCAAGTGCGACGATAGTGATCCCACCAGAAGTGCGTACAAATGATGACCCTAATCCAAGCTTTGCAGAGGCACTTCGTAG
AAATTCGGCTATCAAAGCTCGACCAACACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis