Browse Element(s) Details


OsAffx.8980.1.S1_at

Description gb:NM_193467.1
DB_XREF= gi:34914017
GEN=OJ1014_G12.24
TID=OsAffx.8980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OJ1014_G12.24), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3761011/11transposon protein, putative, unclassified, expressed
LOC_Os03g242609/11transposon protein, putative, unclassified
LOC_Os07g360009/11transposon protein, putative, unclassified
LOC_Os04g537507/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g180006/11transposon protein, putative, unclassified
LOC_Os01g450506/11transposon protein, putative, unclassified
LOC_Os04g082106/11transposon protein, putative, unclassified
LOC_Os06g485806/11transposon protein, putative, unclassified
LOC_Os04g537906/11transposon protein, putative, unclassified
LOC_Os04g155706/11transposon protein, putative, unclassified
LOC_Os05g072906/11transposon protein, putative, unclassified
LOC_Os12g197606/11transposon protein, putative, unclassified
LOC_Os11g404605/11transposon protein, putative, unclassified
LOC_Os02g049805/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g148105/11transposon protein, putative, unclassified
LOC_Os04g491005/11transposon protein, putative, unclassified
LOC_Os04g542505/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g146905/11transposon protein, putative, unclassified
LOC_Os03g137005/11transposon protein, putative, unclassified
LOC_Os09g129304/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g050504/11transposon protein, putative, unclassified
LOC_Os04g303804/11transposon protein, putative, unclassified, expressed
LOC_Os10g219503/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g129703/11transposon protein, putative, unclassified, expressed
LOC_Os12g251903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g244903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g365902/11transposon protein, putative, unclassified
LOC_Os05g249201/11transposon protein, putative, unclassified
LOC_Os10g190641/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g377101/11transposon protein, putative, unclassified
LOC_Os06g299601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g519601/11transposon protein, putative, unclassified
LOC_Os07g109001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed
LOC_Os01g37700OsAffx.32106.1.S1_at11/111+21404854..21406169hypothetical protein
LOC_Os01g37700OsAffx.32106.2.S1_x_at5/111+21404854..21406169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8980.1.S1_at--790--34126Chr09:8723791..8723815 (25 bp)
CAGAGTAATCCAGGCCTAGAGCACT
LOC_Os09g14690
OsAffx.8980.1.S1_at--515--7011Chr01:21376146..21376170 (25 bp)
GTAAAGAAAGTGTTGCGTTATTTGC
LOC_Os01g37610
OsAffx.8980.1.S1_at--139--7311Chr01:21376137..21376161 (25 bp)
GTGTTGCGTTATTTGCAAGGAACAA
LOC_Os01g37610
OsAffx.8980.1.S1_at--415--42936Chr12:23477225..23477249 (25 bp)
CCTCATGCTGTCTTACAGAAGATCA
NONE
OsAffx.8980.1.S1_at--1043--21322Chr09:8723876..8723900 (25 bp)
ACAGAAGATCAGAATCACTCCAGAT
LOC_Os09g14690
OsAffx.8980.1.S1_at--1055--64323Chr09:8723882..8723906 (25 bp)
GATCAGAATCACTCCAGATAGTGGG
LOC_Os09g14690
OsAffx.8980.1.S1_at--889--28130Chr12:23477497..23477521 (25 bp)
AAGTTATACTGCGACAACGAACCCG
NONE
OsAffx.8980.1.S1_at--340--67929Chr12:23477499..23477523 (25 bp)
GTTATACTGCGACAACGAACCCGCA
NONE
OsAffx.8980.1.S1_at--425--2594Chr04:31812072..31812096 (25 bp)
AACGAACCCGCAGTAATGTACACTC
LOC_Os04g53750
OsAffx.8980.1.S1_at--165--5454Chr04:31812075..31812099 (25 bp)
GAACCCGCAGTAATGTACACTCACA
LOC_Os04g53750
OsAffx.8980.1.S1_at--909--4194Chr04:31812078..31812102 (25 bp)
CCCGCAGTAATGTACACTCACAACA
LOC_Os04g53750
Target Sequence 
CAGAGTAATCCAGGCCTAGAGCACTGGAAATTGGTAAAGAAAGTGTTGCGTTATTTGCAAGGAACAAAAGGCCTCATGCT
GTCTTACAGAAGATCAGAATCACTCCAGATAGTGGGGTACTCAGATTCTGACTTTGCAAAAGATAATACAAAGTCAACAT
CGGGATACGTGTTTACCCTGGCAGGAGGAGCTATTTCATGGAAAAGCTCAAAACAGACTATCACTGCAGGGTCTACTATG
TATGCCGAGTTTATAGCATGCTATGAGGCAACGGGGCAGGTGAACTGGCTAAAGAAGTTCATACCCGGTTTAAAGGTGGT
TGACAGTATTGAGAAACCACTAAAGTTATACTGCGACAACGAACCCGCAGTAATGTACACTCACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis