Browse Element(s) Details


OsAffx.8984.1.S1_x_at

Description gb:NM_193446.1
DB_XREF= gi:34913975
GEN=B1110C07.26
TID=OsAffx.8984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1110C07.26 (B1110C07.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g333901/11Cation-transporting ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os05g33370Os.14919.1.S1_at6/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370Os.56216.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370OsAffx.29313.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed
LOC_Os05g33410Os.26626.1.S1_at1/115+19551358..19552671Basic 7S globulin precursor, putative, expressed
LOC_Os05g33420NANA5+19555731..19557051Xyloglucanase inhibitor, putative
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019829molecular_functioncation-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8984.1.S1_x_at--1129--9171Chr01:21275825..21275877 (25 bp)
TGCCGGGCCGGCCAAAGAAAAGTTG
NONE
OsAffx.8984.1.S1_x_at--1055--2171Chr01:21276041..21276065 (25 bp)
ACACGGAGCTCGATATGGCCGCTGA
NONE
OsAffx.8984.1.S1_x_at--720--1931Chr01:21276043..21276067 (25 bp)
ACGGAGCTCGATATGGCCGCTGACG
NONE
OsAffx.8984.1.S1_x_at--150--8091Chr01:21276045..21276069 (25 bp)
GGAGCTCGATATGGCCGCTGACGCC
NONE
OsAffx.8984.1.S1_x_at--195--9391Chr01:21276050..21276074 (25 bp)
TCGATATGGCCGCTGACGCCATCAA
NONE
OsAffx.8984.1.S1_x_at--954--271Chr01:21276053..21276077 (25 bp)
ATATGGCCGCTGACGCCATCAAGCT
NONE
OsAffx.8984.1.S1_x_at--822--371Chr01:21276070..21276094 (25 bp)
ATCAAGCTCGTGCTGCCGAGCTCGA
NONE
OsAffx.8984.1.S1_x_at--483--3451Chr01:21276265..21276289 (25 bp)
CAGTCATCGCTGCTCAAGTCGAGCT
NONE
OsAffx.8984.1.S1_x_at--947--9611Chr01:21276268..21276292 (25 bp)
TCATCGCTGCTCAAGTCGAGCTCGC
NONE
OsAffx.8984.1.S1_x_at--498--9093Chr02:32258050..32258073 (24 bp)
TGCTCAAGTCGAGCTCGCCCTGCCA
NONE
OsAffx.8984.1.S1_x_at--530--4011Chr01:21276379..21276403 (25 bp)
CGTCGACTGGCGGAGGCACGGGAGA
NONE
Target Sequence 
TGCCGGGCCGGCCAAAGAAAAGTTGGAAGTTTGGGATAGTTGGGGGTGAGCTCGCCGATGGAGGGGGGAGAGAGCTCGAG
CTCGTCGTCCTCCGCCACACGGAGCTCGATATGGCCGCTGACGCCATCAAGCTCGTGCTGCCGAGCTCGAGCTCGCCCTG
CCGCCCCGCTGCCGCCGTCGAGCTCGCGCCCGCCCCGCTCGCGTCTTGCTCGCCGACGCCTCCCCCCTCACGCGCAACCG
CGGTCGGCGACACCTCCCCCGGGCCGCGGCCGGTGACACCCCTCCCCCCGCACGCACGCAGCGCTGTCGTCCTCCTCCCC
CAGTCATCGCTGCTCAAGTCGAGCTCGCCCTGCCACCCTGCCGCTCACACCGAGCTCGTGTCCGCCCCGCTCACGCCGAG
CTCGCCGATGCCCCCCTCTTCGCCCCCGCTCCCGCGTCGACTGGCGGAGGCACGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8984.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis