Browse Element(s) Details


OsAffx.9013.1.S1_x_at

Description gb:NM_193339.1
DB_XREF= gi:34913761
GEN=OSJNBa0051H17.29
TID=OsAffx.9013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0051H17.29 (OSJNBa0051H17.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3651011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36460Os.10115.1.S1_at11/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36460Os.57514.1.S1_x_at1/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36470OsAffx.11348.2.S1_x_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.2.S1_s_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_x_at7/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_at4/111+20572238..20572864expressed protein
LOC_Os01g36480OsAffx.11349.1.S1_at11/111+20576093..20576875hypothetical protein
LOC_Os01g36490OsAffx.23529.1.S1_at11/111+20578181..20578490hypothetical protein
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9013.1.S1_x_at--719--9791Chr01:20590140..20590164 (25 bp)
TAAGCAGTCCTTCCCACCAGAAGAC
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--51--1451Chr01:20590158..20590182 (25 bp)
AGAAGACCCCGAACCTGGATATAAG
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--763--6511Chr01:20590365..20590389 (25 bp)
GATATTCCAGATTACTTCCCTAAGC
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--314--1571Chr01:20590387..20590411 (25 bp)
AGCTATCAGAAGATGTCTCCTCAGA
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--1017--2331Chr01:20590413..20590437 (25 bp)
AAAGAAATGCAGACCTATCCCCAGC
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--307--7631Chr01:20590519..20590543 (25 bp)
GGGACAGAGCCCCATCTGATAACAA
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--984--7591Chr01:20590549..20590573 (25 bp)
GGGCACCCAAAAGATCATGCTCTGT
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--537--411Chr01:20590562..20590586 (25 bp)
ATCATGCTCTGTTTCTAGGGAGGAC
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--84--10071Chr01:20590577..20590601 (25 bp)
TAGGGAGGACAACACTCCTTTGGAA
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--190--1271Chr01:20590613..20590637 (25 bp)
AGATAATGTCAGATCAACTCCAGGG
LOC_Os01g36510
OsAffx.9013.1.S1_x_at--878--4751Chr01:20590806..20590830 (25 bp)
GCTGAAGGCTTCACCCAATCTAGGA
LOC_Os01g36510
Target Sequence 
TAAGCAGTCCTTCCCACCAGAAGACCCCGAACCTGGATATAAGAAAGACTTCAGAAGGAGAAAAGAAGACGATGATGGAG
ACAACCAAGAGGAGGAAGAGTTTATGGAATCTGAAGATGAAGATGGGAAGGTTGATATTCCAGATTACTTCCCTAAGCTA
TCAGAAGATGTCTCCTCAGACAAAGAAATGCAGACCTATCCCCAGCAAAAGGGAATAGAGGAAAAAACTCCAATCTTGTC
AAAGCGAGACTTACTGACAGAAGAGACAGTTATCAACAGATGTGGGAGGGACAGAGCCCCATCTGATAACAAATGTGGGG
CACCCAAAAGATCATGCTCTGTTTCTAGGGAGGACAACACTCCTTTGGAAACAGGGATGATAGATAATGTCAGATCAACT
CCAGGGGGAGATAAAGGTCCCATACAAACAAACAGAAGTGGGGAGGATCAGGATCTAATGGATGAAGACCTAAGACAACT
GGAAGTGATTGCGGGAGAGGAGAAAATTCAGACAAGGACTGATGATGCTGAAGGCTTCACCCAATCTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9013.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis