Browse Element(s) Details


OsAffx.9177.1.S1_x_at

Description gb:NM_192575.1
DB_XREF= gi:34912233
GEN=P0415C01.19
TID=OsAffx.9177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0415C01.19 (P0415C01.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g228501/11retrotransposon protein, putative, unclassified, expressed
LOC_Os08g280701/11hypothetical protein
LOC_Os08g023601/113' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os04g093801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22800NANA11+12636376..12636852hypothetical protein
LOC_Os11g22810OsAffx.6971.1.S1_at1/1111+12644974..12646913retrotransposon protein, putative, unclassified
LOC_Os11g22820NANA11+12647404..12648282hypothetical protein
LOC_Os11g22830NANA11+12650801..12651691retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22840OsAffx.1651.1.S1_at1/1111+12651990..12657494retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22840OsAffx.1651.1.S1_x_at1/1111+12651990..12657494retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22850OsAffx.9177.1.S1_x_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22850OsAffx.16111.1.S1_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22850OsAffx.16585.1.S1_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22850OsAffx.25487.1.S1_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22860NANA11+12668870..12669217hypothetical protein
LOC_Os11g22870OsAffx.13030.1.S1_x_at2/1111+12672192..12675323hypothetical protein
LOC_Os11g22870OsAffx.17213.1.S1_x_at1/1111+12672192..12675323hypothetical protein
LOC_Os11g22880Os.54523.1.S1_at1/1111+12680089..12680968hypothetical protein
LOC_Os11g22880OsAffx.12179.1.S1_x_at1/1111+12680089..12680968hypothetical protein
LOC_Os11g22890OsAffx.18972.1.S1_at11/1111+12685028..12685543hypothetical protein
LOC_Os11g22900OsAffx.22946.1.S1_at1/1111+12687819..12689081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22910NANA11+12689733..12692141retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9177.1.S1_x_at--502--919Chr11:19551183..19551205 (23 bp)
AGGCTGAACCGCCATCAATGCGCGG
NONE
OsAffx.9177.1.S1_x_at--1080--1714Chr12:26564729..26564753 (25 bp)
ATTTAATGCGGTAAGGGCGGACGTG
NONE
OsAffx.9177.1.S1_x_at--74--1914Chr12:26564749..26564802 (25 bp)
ACGTGCGGCGTGACCAGACTGTGAC
NONE
OsAffx.9177.1.S1_x_at--172--4674Chr12:26564785..26564809 (25 bp)
GCGTGACCAGACTGTGACCGGCCTG
NONE
OsAffx.9177.1.S1_x_at--988--1952Chr01:23346673..23346697 (25 bp)
ACTGTGACCGGCCTGTCGCTGGTCA
NONE
OsAffx.9177.1.S1_x_at--1007--8911Chr01:23346677..23346701 (25 bp)
TGACCGGCCTGTCGCTGGTCACGTC
NONE
OsAffx.9177.1.S1_x_at--751--3871Chr01:23346685..23346709 (25 bp)
CTGTCGCTGGTCACGTCCGGTCGGA
NONE
OsAffx.9177.1.S1_x_at--682--6694Chr04:15257126..15257150 (25 bp)
GTTCGCCCCTGTACCCGGCGGAGTG
NONE
OsAffx.9177.1.S1_x_at--461--30168Chr12:19023228..19023252 (25 bp)
AATGACAGGGCTGTCCCCCGTGTCA
NONE
OsAffx.9177.1.S1_x_at--887--1052Chr04:15257272..15257296 (25 bp)
AGGTGGCGCTGGGTCCCACTCGAGG
NONE
OsAffx.9177.1.S1_x_at--109--1993Chr04:15257289..15257313 (25 bp)
ACTCGAGGACGGACGGCCGCTTAGC
NONE
Target Sequence 
AGGCTGAACCGCCATCAATGCGCGGCGCCCCAACCGTCCCTCACCGCATTTAATGCGGTAAGGGCGGACGTGCGGCGTGA
CCAGACTGTGACCGGCCTGTCGCTGGTCACGTCCGGTCGGACGGGCAGCCGTGCCCCCACGTTCGCCCCTGTACCCGGCG
GAGTGGAGGCAGAGGGAATGACAGGGCTGTCCCCCGTGTCAGGCGGGAGGTGGCGCTGGGTCCCACTCGAGGACGGACGG
CCGCTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9177.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis