Browse Element(s) Details


OsAffx.9218.2.S1_at

Description tigr:9629.m04429
TID=OsAffx.9218.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4628011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein
LOC_Os01g46270OsAffx.9219.1.S1_at11/111+26638916..26639962wax synthase isoform 2, putative, expressed
LOC_Os01g46280OsAffx.9218.1.S1_s_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46280OsAffx.9218.2.S1_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46290Os.32827.1.S1_at11/111+26648264..26651617Lipase family protein, expressed
LOC_Os01g46300NANA1+26653326..26653755hypothetical protein
LOC_Os01g46310OsAffx.31869.5.S1_x_at2/111+26658893..26659276retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9218.2.S1_at--435--4051Chr01:26643828..26643852 (25 bp)
CGATGAAGTTGTGGGCGGCACTAGT
LOC_Os01g46280
OsAffx.9218.2.S1_at--565--8651Chr01:26643801..26643825 (25 bp)
TGGGCTCAGGCCTCGCTCTATCATC
LOC_Os01g46280
OsAffx.9218.2.S1_at--349--891Chr01:26643794..26643818 (25 bp)
AGGCCTCGCTCTATCATCTACATCT
LOC_Os01g46280
OsAffx.9218.2.S1_at--697--451Chr01:26643523..26643803 (25 bp)
ATCTACATCTCGTTCTTTGGATGCT
LOC_Os01g46280
OsAffx.9218.2.S1_at--542--9551Chr01:26643510..26643790 (25 bp)
TCTTTGGATGCTCTACTCTCCATGT
LOC_Os01g46280
OsAffx.9218.2.S1_at--54--8571Chr01:26643506..26643529 (24 bp)
TGGATGCTCTACTCTCCATGTCTCT
LOC_Os01g46280
OsAffx.9218.2.S1_at--131--8331Chr01:26643453..26643477 (25 bp)
GGCTCCGCAGGATGTCGCGGCTTAC
LOC_Os01g46280
OsAffx.9218.2.S1_at--1155--7991Chr01:26643444..26643468 (25 bp)
GGATGTCGCGGCTTACGCGCCAGCC
LOC_Os01g46280
OsAffx.9218.2.S1_at--810--8291Chr01:26643435..26643459 (25 bp)
GGCTTACGCGCCAGCCGATTCCGTG
LOC_Os01g46280
OsAffx.9218.2.S1_at--794--3371Chr01:26643424..26643448 (25 bp)
CAGCCGATTCCGTGTCCTCGTGTCT
LOC_Os01g46280
OsAffx.9218.2.S1_at--112--8711Chr01:26642951..26643436 (25 bp)
TGTCCTCGTGTCTCCCGGCGTGGTG
LOC_Os01g46280
Target Sequence 
CGATGAAGTTGTGGGCGGCACTAGTGGTGGGCTCAGGCCTCGCTCTATCATCTACATCTCGTTCTTTGGATGCTCTACTC
TCCATGTCTCTCCCTCCCTTCTCTCCATTCTCCCAACTCGGCTCCGCAGGATGTCGCGGCTTACGCGCCAGCCGATTCCG
TGTCCTCGTGTCTCCCGGCGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9218.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis