Browse Element(s) Details


OsAffx.9230.1.S1_x_at

Description gb:NM_192336.1
DB_XREF= gi:34911755
GEN=P0038D11.21
TID=OsAffx.9230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0038D11.21 (P0038D11.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g243306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g079802/11expressed protein
LOC_Os04g398301/11hypothetical protein
LOC_Os06g423501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g220101/11NAD, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24300NANA8+14530555..14531231expressed protein
LOC_Os08g24310Os.54153.1.S1_at11/118+14540212..14546578Leucine Rich Repeat family protein, expressed
LOC_Os08g24320OsAffx.4814.1.S1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24320Os.24150.1.A1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24330Os.52481.1.S1_at11/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24330OsAffx.9230.1.S1_x_at6/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24340NANA8+14563219..14564014hypothetical protein
LOC_Os08g24350OsAffx.17125.1.S1_at11/118+14565592..14566607hypothetical protein
LOC_Os08g24350OsAffx.2524.2.S1_at2/118+14565592..14566607hypothetical protein
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein
LOC_Os08g24370OsAffx.17126.1.S1_at11/118+14575515..14577065F-box domain containing protein
LOC_Os08g24380OsAffx.17127.1.S1_at11/118+14581809..14588483NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006350biological_processtranscription
GO:0005739cellular_componentmitochondrion
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9230.1.S1_x_at--205--955Chr07:21807692..21807716 (25 bp)
AGGAAGCGGCTCCTCGGCGGTGTTG
NONE
OsAffx.9230.1.S1_x_at--866--8815Chr07:21807712..21807736 (25 bp)
TGTTGACGCGGCGTGACCTCCTGCT
NONE
OsAffx.9230.1.S1_x_at--638--4613Chr01:26446095..26446119 (25 bp)
GCGAGCGTCGCCCAGGGAGGAGGGC
NONE
OsAffx.9230.1.S1_x_at--474--7653Chr01:26446156..26446180 (25 bp)
GGGAGGAGATCGATTCAAGAGAGGA
NONE
OsAffx.9230.1.S1_x_at--602--8011Chr01:26446196..26446220 (25 bp)
GGAGGAGATTGACACCATTGGATAT
NONE
OsAffx.9230.1.S1_x_at--742--6591Chr01:26446202..26446226 (25 bp)
GATTGACACCATTGGATATGGCAAT
NONE
OsAffx.9230.1.S1_x_at--786--2152Chr01:26446207..26446231 (25 bp)
ACACCATTGGATATGGCAATCGGAT
NONE
OsAffx.9230.1.S1_x_at--398--3615Chr06:12743583..12743602 (20 bp)
CATTGGATATGGCAATCGGATGGTT
LOC_Os06g22010
OsAffx.9230.1.S1_x_at--700--8215Chr01:26446221..26446245 (25 bp)
GGCAATCGGATGGTTGAGATTACGC
NONE
OsAffx.9230.1.S1_x_at--309--6054Chr12:4050056..4050080 (25 bp)
GAGATTACGCGTGTCTGTCAGATGC
LOC_Os12g07980
OsAffx.9230.1.S1_x_at--698--3997Chr12:4050065..4050089 (25 bp)
CGTGTCTGTCAGATGCGTCTGCTAT
LOC_Os12g07980
Target Sequence 
AGGAAGCGGCTCCTCGGCGGTGTTGACGCGGCGTGACCTCCTGCTCCCGCGTCGGCGGTCGAGGGCGGCGCGGGACGTGG
GACTCGGGGCACGGCGACGGCAGCGAGGAGACGGCGCGGGTCGCAGCGTCGGCGGTCGAGGGCGGCGCGGGACGCGCGCG
CGGGACGCGCGCGCGTGGCACGGGGCTGCTGAGGAGGCGATGCGGCGGCGAGGTGAGAAGGTGAGGAGGCGAGGAGATGA
CGCAGGGAGGAGGGCGAAGGTGGATGATCGATCCGATGCGAGGTGGAGGCGCGTTGGAGAGGGCGGCGGCGATCGCGGAG
GAGGCCGGCGGGCGTGGCTGGCGAGGAGGCGATGCGGCGGCGGGGCGAGCGTCGCCCAGGGAGGAGGGCGAAGGACGCGG
CGTGGGAGGAGGAGGAGTGGGCGTGGGGAGGAGATCGATTCAAGAGAGGAGCGAGCGCGTGATGGGGAGGAGATTGACAC
CATTGGATATGGCAATCGGATGGTTGAGATTACGCGTGTCTGTCAGATGCGTCTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9230.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis