Browse Element(s) Details


OsAffx.9239.1.S1_at

Description tigr:9629.m04357
TID=OsAffx.9239.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g456007/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45570Os.8170.1.S1_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45570Os.8170.2.S1_x_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45580NANA1+26216076..26219312transposon protein, putative, unclassified
LOC_Os01g45590NANA1+26219952..26226107transposon protein, putative, unclassified
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein
LOC_Os01g45620Os.34984.3.S1_x_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45620Os.34984.1.A1_at11/111+26244484..26249824Protein kinase domain containing protein, expressed
LOC_Os01g45624Os.34984.2.S1_at11/111+26250302..26250997Oleosin family protein, expressed
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9239.1.S1_at--191--5151Chr01:26235133..26235157 (25 bp)
GCAACAAGCAGCATGGAAGGCCGCT
NONE
OsAffx.9239.1.S1_at--126--2731Chr01:26235128..26235152 (25 bp)
AAGCAGCATGGAAGGCCGCTGCAGC
NONE
OsAffx.9239.1.S1_at--757--7651Chr01:26235077..26235101 (25 bp)
GGGATGCATGCAGCAAACAGCCATG
NONE
OsAffx.9239.1.S1_at--142--4991Chr01:26235072..26235096 (25 bp)
GCATGCAGCAAACAGCCATGGCCAT
NONE
OsAffx.9239.1.S1_at--331--3411Chr01:26234951..26234975 (25 bp)
CAGCAGCGGCATCGCGCGAGAATAC
LOC_Os01g45600
OsAffx.9239.1.S1_at--827--4691Chr01:26234946..26234970 (25 bp)
GCGGCATCGCGCGAGAATACATGCA
LOC_Os01g45600
OsAffx.9239.1.S1_at--1027--531Chr01:26234941..26234965 (25 bp)
ATCGCGCGAGAATACATGCAAGCGG
LOC_Os01g45600
OsAffx.9239.1.S1_at--932--5071Chr01:26234905..26234929 (25 bp)
GCACCAGCAGTCACCCGGCGGGAGC
LOC_Os01g45600
OsAffx.9239.1.S1_at--1065--9331Chr01:26234867..26234891 (25 bp)
TCGCCCAGGCGCTAGGTCAGTGCAT
LOC_Os01g45600
OsAffx.9239.1.S1_at--1089--891Chr01:26234861..26234885 (25 bp)
AGGCGCTAGGTCAGTGCATGCACTA
LOC_Os01g45600
OsAffx.9239.1.S1_at--987--7111Chr01:26234852..26234876 (25 bp)
GTCAGTGCATGCACTAGCAGTAACT
LOC_Os01g45600
Target Sequence 
GCAACAAGCAGCATGGAAGGCCGCTGCAGCACAGCACGCAGCAGCGCGCGCAGGAGGGGATGCATGCAGCAAACAGCCAT
GGCCATGGCCATGGGTCGGAGTGGCCACTTCCCGGCCAGGCCACCATGGGCAGCCAGCAGCAGCAGCGGCATCGCGCGAG
AATACATGCAAGCGGGAGCGGGGCACGCACCAGCAGTCACCCGGCGGGAGCCGACCACGGCCACTCGCCCAGGCGCTAGG
TCAGTGCATGCACTAGCAGTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis