Browse Element(s) Details


OsAffx.9248.1.S1_at

Description gb:NM_192275.1
DB_XREF= gi:34911633
GEN=P0039G05.19
TID=OsAffx.9248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0039G05.19 (P0039G05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g454394/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed
LOC_Os01g45470Os.10486.1.S1_at5/111+26127617..26128012hypothetical protein
LOC_Os01g45480NANA1+26130479..26131332hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9248.1.S1_at--649--7611Chr01:26109332..26109356 (25 bp)
GGGAATCTTGGAGCCCGCGGCCCGT
NONE
OsAffx.9248.1.S1_at--167--9671Chr01:26109298..26109322 (25 bp)
TCACCCCTCAACTGTGCGTCGTTAA
NONE
OsAffx.9248.1.S1_at--792--9691Chr01:26109291..26109315 (25 bp)
TCAACTGTGCGTCGTTAATCGCGGG
NONE
OsAffx.9248.1.S1_at--344--7511Chr01:26109064..26109267 (25 bp)
GTGGTTGCTGTCGTGCCGTTCCGCC
NONE
OsAffx.9248.1.S1_at--83--4511Chr01:26109050..26109253 (25 bp)
GCCGTTCCGCCAAGTTTAGATTCGA
NONE
OsAffx.9248.1.S1_at--1022--4111Chr01:26109044..26109068 (25 bp)
CCGCCAAGTTTAGATTCGAGGAGGA
LOC_Os01g45439
OsAffx.9248.1.S1_at--1131--5911Chr01:26108967..26108991 (25 bp)
GAGCAGGCGATTGGCTCCGTTCCAA
LOC_Os01g45439
OsAffx.9248.1.S1_at--679--6611Chr01:26108959..26108983 (25 bp)
GATTGGCTCCGTTCCAACAGTCCAA
LOC_Os01g45439
OsAffx.9248.1.S1_at--504--4371Chr01:26108946..26108970 (25 bp)
CCAACAGTCCAAGACGAGGATTATT
LOC_Os01g45439
OsAffx.9248.1.S1_at--583--6551NONE
GATTATTTTACAAAGCCACCAGCAT
NONE
OsAffx.9248.1.S1_at--769--10411NONE
TTATTTTACAAAGCCACCAGCATCG
NONE
Target Sequence 
GGGAATCTTGGAGCCCGCGGCCCGTTTTGCAGCCTCACCCCTCAACTGTGCGTCGTTAATCGCGGGGCCCTCCCCTCCCC
GTCGCTGCTGTGGTTGCTGTCGTGCCGTTCCGCCAAGTTTAGATTCGAGGAGGAGAAGGGAAGAGAAGAGAAGAGAAGAG
CTCTCCCCTCCCTCTGCGGCGTGTCGGAGCAGGCGATTGGCTCCGTTCCAACAGTCCAAGACGAGGATTATTTTACAAAG
CCACCAGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis