Browse Element(s) Details


OsAffx.9447.1.S1_x_at

Description gb:NM_191187.1
DB_XREF= gi:34909457
GEN=OSJNBa0014K08.26
TID=OsAffx.9447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0014K08.26 (OSJNBa0014K08.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5427011/11transposon protein, putative, unclassified, expressed
LOC_Os01g385801/11decreased apical dominance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54230OsAffx.11598.1.S1_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230OsAffx.11598.1.S1_x_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230Os.33406.1.A1_x_at1/111+31524977..31525769hypothetical protein
LOC_Os01g54240Os.34156.1.S1_a_at10/111+31530293..31538120Nup85 Nucleoporin family protein, expressed
LOC_Os01g54250OsAffx.20380.1.S1_x_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.20380.1.S1_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22711.4.A1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22927.1.S1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54260OsAffx.21171.3.S1_x_at1/111+31544522..31546033retrotransposon protein, putative, unclassified
LOC_Os01g54270OsAffx.9447.1.S1_x_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.9447.1.S1_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.10731.1.A1_a_at2/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.20729.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.38764.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54280OsAffx.11599.1.S1_at11/111+31556935..31557291hypothetical protein
LOC_Os01g54290NANA1+31561363..31565748retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g54300Os.2123.1.S1_at11/111+31579722..31581752glycosyl hydrolase family 5 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0010223biological_processsecondary shoot formation
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9447.1.S1_x_at--922--411Chr01:31553038..31553062 (25 bp)
ATCATCGCCGACTGCTGCGAGCACA
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--861--7591Chr01:31552751..31552775 (25 bp)
GGGCATGGACATGTGCAGCATCAAC
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--453--8132Chr01:31552745..31552769 (25 bp)
GGACATGTGCAGCATCAACCCGGCG
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--478--9431Chr01:31552716..31552740 (25 bp)
TCGGCAGGGAGTACCGGTACGCCTA
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--453--7651Chr01:31552710..31552734 (25 bp)
GGGAGTACCGGTACGCCTACGCCTG
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--217--1331Chr01:31552629..31552653 (25 bp)
AGAGGACGGCCAAGAACTGGCACGA
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--687--4371Chr01:31552620..31552644 (25 bp)
CCAAGAACTGGCACGAGGAGGGCTC
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--230--2771Chr01:31552448..31552572 (25 bp)
AAGACGACGGCGTGGCGATATCGAT
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--1098--6491Chr01:31552432..31552456 (25 bp)
GATATCGATGGTGAGCGCCAAGGAC
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--950--5751Chr01:31552410..31552434 (25 bp)
GACGGGTCGGGCTATGCGCTGGTGC
LOC_Os01g54270
OsAffx.9447.1.S1_x_at--615--6951Chr01:31552342..31552366 (25 bp)
GTACGGGCTGCCCTACGGCTTGCAC
LOC_Os01g54270
Target Sequence 
ATCATCGCCGACTGCTGCGAGCACAACGCCAACACCGCCATCCTCGACAAGCTCCGCCTCCACAACCTCCGCTCCTCCAG
CGGCCAGGACGTCCTCCCCGACGCCAGGGTGGGGCGGTTCAGGATCCCCCTGGACGGGAGCCAGTTCGGCGAGCTGGAGA
CGGCGCTGGACCCGGAGGAGCACGGGCGGGGCATGGACATGTGCAGCATCAACCCGGCGCACGTCGGCAGGGAGTACCGG
TACGCCTACGCCTGCGGCGCCCGCCGGCCGTGCAACTTCCCCAACACGCTCACCAAGGTCGACCTGGTGGAGAGGACGGC
CAAGAACTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCCTTCTTCGTGCCACGCCCCGGCGCCACCGAGGAAGACGACG
GCGTGGCGATATCGATGGTGAGCGCCAAGGACGGGTCGGGCTATGCGCTGGTGCTGGACGGCAAGACGTTCGAGGAGGTC
GCGCGGGCCAAGTTCCCGTACGGGCTGCCCTACGGCTTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9447.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis