Browse Element(s) Details


OsAffx.9549.1.S1_s_at

Description gb:NM_190579.1
DB_XREF= gi:34908241
GEN=P0446B05.8
TID=OsAffx.9549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0446B05.8 (P0446B05.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6268011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660Os.10050.1.S1_at11/111+36614131..36616492myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g62670Os.9677.2.S1_x_at11/111+36622963..36625449Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein
LOC_Os01g62710OsAffx.29313.1.S1_at1/111+36639787..36643050Transposable element protein, putative, MuDR
LOC_Os01g62720NANA1+36644054..36644871GRF zinc finger family protein
LOC_Os01g62730NANA1+36646856..36647065hypothetical protein
LOC_Os01g62740NANA1+36649897..36651381hypothetical protein
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9549.1.S1_s_at--260--631Chr01:36627407..36627431 (25 bp)
ATGCTGCAGCGAGGTGTTCGTAGAT
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--156--4631Chr01:36627399..36627423 (25 bp)
GCGAGGTGTTCGTAGATTTGTTAAC
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--556--10771Chr01:36627382..36627406 (25 bp)
TTGTTAACTGTCATGCCGGTGGCAC
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--688--7531Chr01:36627364..36627388 (25 bp)
GTGGCACCATCGGTCCGGCAAAGAT
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--774--2811Chr01:36627296..36627320 (25 bp)
AAGATTGCGCTGTGCGCGACCTTGT
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--1040--5831Chr01:36627279..36627303 (25 bp)
GACCTTGTTCCGTAGCGCTGTCATG
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--969--6951Chr01:36627268..36627292 (25 bp)
GTAGCGCTGTCATGCCGGTACCACT
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--927--4251Chr01:36627254..36627278 (25 bp)
CCGGTACCACTGTTGATCATGCGAA
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--389--4371Chr01:36627248..36627272 (25 bp)
CCACTGTTGATCATGCGAAGACGCA
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--486--3391Chr01:36627168..36627192 (25 bp)
CAGCGGCGCCAAGGAACAAGATTGG
LOC_Os01g62680
OsAffx.9549.1.S1_s_at--1034--7551Chr01:36627144..36627168 (25 bp)
GGGCGTGCATGACCGTTTTAGTATT
LOC_Os01g62680
Target Sequence 
ATGCTGCAGCGAGGTGTTCGTAGATTTGTTAACTGTCATGCCGGTGGCACCATCGGTCCGGCAAAGATGGATGAAAAGTG
GCGGGAAAGGGAGGAAAAAACAGGCGCGAGGAAGATTGCGCTGTGCGCGACCTTGTTCCGTAGCGCTGTCATGCCGGTAC
CACTGTTGATCATGCGAAGACGCAGATGGACAGTGGTGGCAGAGGGAGGAAAAATTGGACGCAAACGAAAATATGAATGC
AGCGGCGCCAAGGAACAAGATTGGGGCGTGCATGACCGTTTTAGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9549.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis