Browse Element(s) Details


OsAffx.9651.1.S1_x_at

Description tigr:9629.m06936
TID=OsAffx.9651.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7023010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70210Os.2215.1.S1_at11/111+40971463..40975281Polyphosphoinositide-binding protein, putative, expressed
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed
LOC_Os01g70230OsAffx.9651.1.S1_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70230OsAffx.9651.1.S1_x_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70250Os.23698.1.A1_at9/111+41001750..41004370DnaJ domain containing protein, expressed
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9651.1.S1_x_at--88--3951Chr01:40992296..40992320 (25 bp)
CGGCTCGAGTCGTTCTGGGACATGC
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--354--3791Chr01:40992299..40992323 (25 bp)
CTCGAGTCGTTCTGGGACATGCGCG
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--1019--9371Chr01:40992356..40992380 (25 bp)
TCGTTCGACCGGGAGGTCTACGACG
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--783--4491Chr01:40992409..40992433 (25 bp)
GCCGTCAGACTTCGGCGAGGACCTC
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--466--4331NONE
CCATATCAGCTACGGTGAGCGCCAA
NONE
OsAffx.9651.1.S1_x_at--826--391Chr01:40993055..40993076 (22 bp)
ATCAGCTACGGTGAGCGCCAAGAGA
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--971--8391Chr01:40993080..40993104 (25 bp)
GGCGCGGCGTCAGACAAGAACTCGA
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--660--1411Chr01:40993091..40993115 (25 bp)
AGACAAGAACTCGACGTCGCAGCAT
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--482--2751Chr01:40993095..40993119 (25 bp)
AAGAACTCGACGTCGCAGCATGACG
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--164--5311Chr01:40993139..40993163 (25 bp)
GAAGGACAGCGAGGCGACGTACGGC
LOC_Os01g70230
OsAffx.9651.1.S1_x_at--348--1071Chr01:40993256..40993280 (25 bp)
AGGGAACCGGATGCTGGGCGACCAG
LOC_Os01g70230
Target Sequence 
CGGCTCGAGTCGTTCTGGGACATGCGCGGCGAGCAGCGGCGCGCGAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTA
CGACGCGCTCGTCGGCGGCCACGGCGCCGCGCCGCCGTCAGACTTCGGCGAGGACCTCGCCGACGGCGACGGCGTGGACG
CCGACGAGCTGCCGCCGCCGCCGCTCATGGTCATGCCCATATCAGCTACGGTGAGCGCCAAGAGAGGCGGCGCGGCGTCA
GACAAGAACTCGACGTCGCAGCATGACGGCGGCGGCGGCGGCGGCCTGAAGGACAGCGAGGCGACGTACGGCGCCGGCGT
CGGAGGGGAGGAGGGCACGACAACGGCGACGGCGACGGCGACGACGACGAGCATCGGGAGGCAGGTGATCGAGGCCCTGG
AGAGAGGGAACCGGATGCTGGGCGACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9651.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis