Browse Element(s) Details


OsAffx.9698.1.S1_x_at

Description tigr:9629.m00871
TID=OsAffx.9698.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable cytokinin oxidase precursor (ec 1.4.3.-) (cko). (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0926011/11Cytokinin dehydrogenase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09246Os.12093.1.S1_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09246Os.12093.2.S1_x_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09252Os.42888.1.S1_at11/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09252Os.42888.2.S1_x_at10/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09260OsAffx.9698.1.S1_x_at11/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09260Os.56214.1.S1_at10/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09270NANA1+4710325..4710726hypothetical protein
LOC_Os01g09280Os.3818.1.S1_a_at11/111+4711519..4715548myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09290OsAffx.9696.1.S1_at7/111+4721172..4721561transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0008131molecular_functionamine oxidase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9698.1.S1_x_at--297--9451Chr01:4694734..4694758 (25 bp)
TCGGCGATCTCCACTTCGAGGAGGG
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--1103--4591Chr01:4694695..4694719 (25 bp)
GCGACGTCACCTACGAGGAGTTCCT
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--455--9371Chr01:4694566..4694590 (25 bp)
TCGACCGCGGCGTCTTCAAGGGCAT
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--571--451Chr01:4694504..4694528 (25 bp)
ATCTACCCCGTCAACAAATCCAAGT
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--802--2191Chr01:4694396..4694515 (25 bp)
ACAAATCCAAGTGGGATGCGGCGAT
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--474--1051Chr01:4694342..4694366 (25 bp)
AGGTGTTCTACGTGGTGTCGCTGCT
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--614--991Chr01:4694271..4694295 (25 bp)
AGGAGGATACTGAGGTTCTGCGACC
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--1040--7031Chr01:4694233..4694257 (25 bp)
GTACAAGGCGTACCTGGCGCACTAC
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--895--1951Chr01:4694195..4694219 (25 bp)
ACTGGGTGAGGCATTTTGGCGCCAA
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--1161--4391Chr01:4694175..4694199 (25 bp)
GCCAAATGGGATCGCTTCGTGCAGA
LOC_Os01g09260
OsAffx.9698.1.S1_x_at--290--8151Chr01:4694146..4694170 (25 bp)
GGACAAGTACGACCCCAAGAAGCTG
LOC_Os01g09260
Target Sequence 
TCGGCGATCTCCACTTCGAGGAGGGGTTCTCCTTCTCCCGCGACGTCACCTACGAGGAGTTCCTCGACCGGGTGTACGGC
GAGGAGGAGGCCCTCGAGAAGGCCGGGCTATGGCGCGTCCCGCACCCGTGGCTCAACCTGTTCGTCCCGGGCTCCCGCAT
CGCCGACTTCGACCGCGGCGTCTTCAAGGGCATCCTCCAGACGGCCACCGACATCGCCGGACCTCTCATCATCTACCCCG
TCAACAAATCCAAGTGGGATGCGGCGATGTCGGCGGTGACGCCGGAGGGGGAGGAGGAGGTGTTCTACGTGGTGTCGCTG
CTGTTCTCGGCGGTGGCGAACGACGTGGCGGCGCTGGAGGCGCAGAACAGGAGGATACTGAGGTTCTGCGACCTCGCCGG
GATCGGGTACAAGGCGTACCTGGCGCACTACGACAGCCGCGGCGACTGGGTGAGGCATTTTGGCGCCAAATGGGATCGCT
TCGTGCAGAGGAAGGACAAGTACGACCCCAAGAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9698.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis