Browse Element(s) Details


OsAffx.9908.1.S1_at

Description gb:NM_188507.1
DB_XREF= gi:34904097
TID=OsAffx.9908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9908.1.S1_at--533--4691Chr01:6650280..6650304 (25 bp)
GCGGCGGAGGTACTACCTCAACATG
LOC_Os01g12200
OsAffx.9908.1.S1_at--479--3271Chr01:6650298..6650322 (25 bp)
CAACATGGGGTACGCCATCCGGACG
LOC_Os01g12200
OsAffx.9908.1.S1_at--214--9571Chr01:6650345..6650369 (25 bp)
TCTTCTCCAAGGAGCCCAGCTTCGA
LOC_Os01g12200
OsAffx.9908.1.S1_at--2--2931Chr01:6650353..6650377 (25 bp)
AAGGAGCCCAGCTTCGACATCTACA
LOC_Os01g12200
OsAffx.9908.1.S1_at--363--5931NONE
GAGCATAAGGTGCAAGCCTGCAACA
NONE
OsAffx.9908.1.S1_at--1159--9771Chr01:6653564..6653586 (23 bp)
TAAGGTGCAAGCCTGCAACACCGAT
NONE
OsAffx.9908.1.S1_at--558--7771Chr01:6653565..6653589 (25 bp)
GGTGCAAGCCTGCAACACCGATGCA
NONE
OsAffx.9908.1.S1_at--316--5151Chr01:6653576..6653600 (25 bp)
GCAACACCGATGCAGACTGTTCAGA
NONE
OsAffx.9908.1.S1_at--207--2171Chr01:6653579..6653603 (25 bp)
ACACCGATGCAGACTGTTCAGAGGA
NONE
OsAffx.9908.1.S1_at--321--5051Chr01:6653587..6653611 (25 bp)
GCAGACTGTTCAGAGGAAGACACAA
NONE
OsAffx.9908.1.S1_at--693--5731Chr01:6653590..6653614 (25 bp)
GACTGTTCAGAGGAAGACACAAAAC
NONE
Target Sequence 
GCGGCGGAGGTACTACCTCAACATGGGGTACGCCATCCGGACGCTGAGGGAGGAGCTCCCCGATGTCTTCTCCAAGGAGC
CCAGCTTCGACATCTACAGAGATGATATTGTCTTCAAAGATCCTCTCAATAAATTCGAGGGCATTGATAATTATAAAAGG
ATATTCTGGGCATTGCGCTTCACCGGCCGAATCTTCTTCAAAGCACTATGGGTTGATATAGTTAGTATATGGCAGCCTGC
TGAGAATCTTATCATGATTCGCTGGATTGCCCATGGCATTCCTCGAGTCCCATGGGAGGCCCATGGTCGCTTTGATGGTG
CTTCTGAGTATAAACTCGACAAGAATGGGAAGATCTACGAGCATAAGGTGCAAGCCTGCAACACCGATGCAGACTGTTCA
GAGGAAGACACAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis