Browse Element(s) Details


OsAffx.9975.1.S1_at

Description gb:NM_188151.1
DB_XREF= gi:34903385
GEN=OSJNBa0036E02.27
TID=OsAffx.9975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0036E02.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g234805/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23450OsAffx.17114.1.S1_at11/118+14063498..14067466hypothetical protein
LOC_Os08g23450OsAffx.12420.1.S1_at1/118+14063498..14067466hypothetical protein
LOC_Os08g23460Os.55312.1.S1_at11/118+14075038..14075933Harpin-induced protein 1 containing protein, expressed
LOC_Os08g23470Os.52623.1.S1_at11/118+14077130..14080475B3 DNA binding domain containing protein, expressed
LOC_Os08g23480OsAffx.9975.1.S1_at5/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23480OsAffx.19542.3.S1_x_at2/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23490NANA8+14089982..14092042retrotransposon protein, putative, unclassified
LOC_Os08g23500NANA8+14092677..14093117transposon protein, putative, unclassified
LOC_Os08g23510NANA8+14100569..14104965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23520OsAffx.29317.1.S1_at11/118+14105533..14106306hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9975.1.S1_at--238--5293Chr01:10042267..10042291 (25 bp)
GAATGTGACTATACAATCATCCAAA
NONE
OsAffx.9975.1.S1_at--582--2432Chr01:10042289..10042313 (25 bp)
AAAAGCTCATCACCCATCTTATTTC
NONE
OsAffx.9975.1.S1_at--956--432Chr01:10042304..10042328 (25 bp)
ATCTTATTTCTCAACCATCATTAGT
NONE
OsAffx.9975.1.S1_at--545--4971Chr01:10042333..10042357 (25 bp)
GCATCAGTTCTACCATCATTTAATA
NONE
OsAffx.9975.1.S1_at--858--8171NONE
GGAACTCGGAATCGGACTGCCTCAC
NONE
OsAffx.9975.1.S1_at--1034--4032Chr01:10043099..10043123 (25 bp)
CGTTGGCGGCACACGCTGCAGGTCT
NONE
OsAffx.9975.1.S1_at--886--3473Chr01:10043117..10043141 (25 bp)
CAGGTCTGCAGCAGTGCGCTAGTGC
NONE
OsAffx.9975.1.S1_at--1056--1972Chr01:10043180..10043204 (25 bp)
ACTGCTGCAGGCTACGGCGCCAGTG
NONE
OsAffx.9975.1.S1_at--594--1131Chr01:10043137..10043334 (25 bp)
AGTGCGGCAATTGCTGATCGCGTCG
NONE
OsAffx.9975.1.S1_at--462--4612Chr01:10043388..10043412 (25 bp)
GCGACGCTTCGGTTTCTGAATTACG
NONE
OsAffx.9975.1.S1_at--295--1271Chr01:10043420..10043444 (25 bp)
AGATACACCGTACACGCACGTGTGG
NONE
Target Sequence 
GAATGTGACTATACAATCATCCAAAAGCTCATCACCCATCTTATTTCTCAACCATCATTAGTAAATGCATCAGTTCTACC
ATCATTTAATATCACAATTAGGAGTGAAAACAGTACGGAAACTTTCCGGATTCCGGACCTATTTTCAAAAACGGAATCTG
TCGGTCGGAATTTTTTCGGAATTTTTCGGAAACGGAAACGAATTCGGAAATATTTTCTCGGAAACGGAATCGGAAATGAT
AAGGGCAGTTTCCGTCGGAACTCGGAATCGGACTGCCTCACTGCGGGCGGGCGTTGGCGGCACACGCTGCAGGTCTGCAG
CAGTGCGCTAGTGCGGCACTGCGGCTGCGGCGGCAGCCGGCCAAGGCGGCGGACTGCTGCAGGCTACGGCGCCAGTGCGG
CAATTGCTGATCGCGTCGGCGTCGCGACTCGTGAGGGCGAGGAGGAGAGAGACAGAGAGTCCTGCGACTGCGCGACGCTT
CGGTTTCTGAATTACGATCGATTAGATACACCGTACACGCACGTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis