Browse Element(s) Details


Os.10052.1.S1_at

Description gb:AK101341.1
DB_XREF= gi:32986550
TID=Os.10052.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034J20, full insert sequence.
FL= gb:AK101341.1 gb:AK062072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0584011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed
LOC_Os02g05830Os.37946.1.S1_at11/112+2874932..2876450Ribulose bisphosphate carboxylase, small subunit family protein, expressed
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10052.1.S1_at--692--71Chr02:2877090..2877114 (25 bp)
ATTGCTCTACTTTATTTGCTATGAC
LOC_Os02g05840
Os.10052.1.S1_at--1044--10311Chr02:2877009..2877033 (25 bp)
TTTACAGTTCTGTTATCCGTACCGC
LOC_Os02g05840
Os.10052.1.S1_at--969--7311Chr02:2876958..2876982 (25 bp)
GTGCTCTTTTGGTCAGCTTTAGGAA
LOC_Os02g05840
Os.10052.1.S1_at--16--7491Chr02:2876912..2876936 (25 bp)
GTGTGGGTACCTGAAGCTCTGTTGC
LOC_Os02g05840
Os.10052.1.S1_at--598--6291Chr02:2876867..2876891 (25 bp)
GATGATTCTCAGGATGTACCGGGAA
LOC_Os02g05840
Os.10052.1.S1_at--580--5391Chr02:2876832..2876856 (25 bp)
GAAGCAGGCTTCGTGTCGACACTGA
LOC_Os02g05840
Os.10052.1.S1_at--440--8911Chr02:2876810..2876834 (25 bp)
TGACGAATCCGAGCTAACCATGCCT
LOC_Os02g05840
Os.10052.1.S1_at--420--3291Chr02:2876736..2876760 (25 bp)
CAAATGTGCTGCTGACTTCTATGGG
LOC_Os02g05840
Os.10052.1.S1_at--476--8011Chr02:2876706..2876730 (25 bp)
GGAGGAGTCCTGATGTTTTTCCTTT
LOC_Os02g05840
Os.10052.1.S1_at--544--10111Chr02:2876644..2876668 (25 bp)
TATGTTCGGTTTAGACCCTTGCTTT
LOC_Os02g05840
Os.10052.1.S1_at--870--9171Chr02:2876596..2876620 (25 bp)
TGCCTTCTAGTTCTACCGTTTGAGA
LOC_Os02g05840
Target Sequence 
ATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATA
GTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACAT
TCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGT
ACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGA
TGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGT
TTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTC
CTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis