Browse Element(s) Details


Os.10079.1.S1_at

Description gb:AK120688.1
DB_XREF= gi:37990311
TID=Os.10079.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169B22, full insert sequence.
FL= gb:AK060019.1 gb:AK120688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1382011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13800Os.12755.2.S1_s_at10/113+7455335..7457261NHP2-like protein 1, putative, expressed
LOC_Os03g13810Os.13497.1.S2_at11/113+7459432..7462341expressed protein
LOC_Os03g13810Os.13497.1.S1_at11/113+7459432..7462341expressed protein
LOC_Os03g13820Os.10079.1.S1_at11/113+7462397..7466601protein kinase family protein, putative, expressed
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed
LOC_Os03g13850OsAffx.12847.1.S1_s_at11/113+7485066..7491913Cell cycle checkpoint protein RAD17, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10079.1.S1_at--383--4231Chr03:7463060..7463084 (25 bp)
CCGATACTTGACAGCGGCGACATCT
LOC_Os03g13820
Os.10079.1.S1_at--105--8391Chr03:7463045..7463069 (25 bp)
GGCGACATCTCAGATCTGCTGGACG
LOC_Os03g13820
Os.10079.1.S1_at--312--1831Chr03:7463023..7463047 (25 bp)
ACGCCGACCTGGACGTGAAGCACGA
LOC_Os03g13820
Os.10079.1.S1_at--46--9331Chr03:7462941..7462965 (25 bp)
TCGCCTCAGGCCGAAGATATCGCAG
LOC_Os03g13820
Os.10079.1.S1_at--737--251Chr03:7462835..7462949 (25 bp)
ATATCGCAGGTACTGAGCGTGCTCC
LOC_Os03g13820
Os.10079.1.S1_at--825--9091Chr03:7462760..7462784 (25 bp)
TGCGTGGACGACGAGACCTACCCGG
LOC_Os03g13820
Os.10079.1.S1_at--859--1371Chr03:7462626..7462650 (25 bp)
AGAGCGGTGTAGTCGATCGTCCAGC
LOC_Os03g13820
Os.10079.1.S1_at--769--6391Chr03:7462612..7462636 (25 bp)
GATCGTCCAGCTTCGATTGACAAGC
LOC_Os03g13820
Os.10079.1.S1_at--102--8971Chr03:7462595..7462619 (25 bp)
TGACAAGCTTGCTGTTTGCTTTGGC
LOC_Os03g13820
Os.10079.1.S1_at--624--10831Chr03:7462520..7462544 (25 bp)
TTGGCATTGTTTGGATACGGCTTAC
LOC_Os03g13820
Os.10079.1.S1_at--330--7031Chr03:7462487..7462511 (25 bp)
GTACAGAACCACATGCGCCAAATTT
LOC_Os03g13820
Target Sequence 
CCGATACTTGACAGCGGCGACATCTCAGATCTGCTGGACGCCGACCTGGACGTGAAGCACGACGACGCCGAGGTGAAGCG
GATGGCCTTGGCCGCGTCGCTTTGCCTCAGGAGGTCGGCTCGCCTCAGGCCGAAGATATCGCAGGTACTGAGCGTGCTCC
GAGGAGAGAGCGAGGTGAGCCTCGACGACCTGAAAGCCGAGCCGGCGGACTGCGTGGACGACGAGACCTACCCGGCGGCG
AACGTGAGGACGCACCTGGGCCTCGCGCTGCTGGACGTGGAGGACGCCGAGTCCATCTCAAGCACAGAGCACAGCAACCT
CAGCCCCCTCGAGGAGTACCTGCGAGAGCGGTGTAGTCGATCGTCCAGCTTCGATTGACAAGCTTGCTGTTTGCTTTGGC
TGCTTCCTTTTTCTTCTCTTTTTGTTACTAAATTTTTGTTTGGGGTTGGGTTGGCATTGTTTGGATACGGCTTACANACA
CATGTACAGAACCACATGCGCCAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis