Browse Element(s) Details

Os.10139.1.S1_s_at

Description

gb:U37687.1
DB_XREF= gi:1574943
GEN=Rubq1
TID=Os.10139.1
CNT=221
FEA=FLmRNA
TIER=FL+Stack
STK=43
UG=Os.10139 (NCBI UniGene Cluster)
DEF=Oryza sativa polyubiquitin (Rubq1) mRNA, complete cds.
PROD=polyubiquitin
FL= gb:AK121590.1 gb:U37687.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46770	11/11	polyubiquitin containing 7 ubiquitin monomers, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g46720	Os.51429.1.S1_at	11/11	6	+	28376095..28381491	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730	OsAffx.28138.1.S1_at	11/11	6	+	28382667..28384807	hypothetical protein
LOC_Os06g46740	Os.55380.1.S1_at	11/11	6	+	28387377..28388576	Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754	Os.50821.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	Os.57130.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	OsAffx.28139.1.S1_at	3/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46770	Os.10139.1.S1_s_at	11/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770	Os.57479.1.S1_x_at	3/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770	Os.25748.1.S1_x_at	1/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46780	OsAffx.15958.1.S1_at	9/11	6	+	28405288..28406220	Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46799	Os.53303.1.S1_at	11/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799	Os.5843.1.S1_at	11/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799	Os.23700.1.A1_at	1/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed
LOC_Os06g46820	Os.17675.1.S1_at	11/11	6	+	28425962..28429243	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006464	biological_process	protein modification
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0007568	biological_process	aging
GO:0042787	biological_process	protein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622	cellular_component	intracellular
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10139.1.S1_s_at--558--431	1	Chr06:28402924..28402948 (25 bp)	CCTTCACCTGGTTCTCAGGCTCAGG	LOC_Os06g46770
Os.10139.1.S1_s_at--987--431	1	Chr06:28402996..28403020 (25 bp)	CCTTGAGGTTGAGTCGTCCGACACT	LOC_Os06g46770
Os.10139.1.S1_s_at--1150--615	1	Chr06:28403000..28403024 (25 bp)	GAGGTTGAGTCGTCCGACACTATTG	LOC_Os06g46770
Os.10139.1.S1_s_at--549--609	1	Chr06:28403006..28403030 (25 bp)	GAGTCGTCCGACACTATTGACAACG	LOC_Os06g46770
Os.10139.1.S1_s_at--187--721	1	Chr06:28403008..28403032 (25 bp)	GTCGTCCGACACTATTGACAACGTG	LOC_Os06g46770
Os.10139.1.S1_s_at--49--401	1	Chr06:28403010..28403034 (25 bp)	CGTCCGACACTATTGACAACGTGAA	LOC_Os06g46770
Os.10139.1.S1_s_at--336--117	1	Chr06:28403184..28403208 (25 bp)	AGTAAGTCCTCAGCCATGGAGCTGC	LOC_Os06g46770
Os.10139.1.S1_s_at--774--285	1	Chr06:28403187..28403211 (25 bp)	AAGTCCTCAGCCATGGAGCTGCTGC	LOC_Os06g46770
Os.10139.1.S1_s_at--1044--1009	2	Chr06:28403258..28403282 (25 bp)	TATGGTTGTCTGGTCTGGTCCTTGG	LOC_Os06g46770
Os.10139.1.S1_s_at--168--947	2	Chr06:28403266..28403290 (25 bp)	TCTGGTCTGGTCCTTGGTCGTGTCC	LOC_Os06g46770
Os.10139.1.S1_s_at--616--857	2	Chr06:28403273..28403297 (25 bp)	TGGTCCTTGGTCGTGTCCCGTTTCA	LOC_Os06g46770

Target Sequence

CCTTCACCTGGTTCTCAGGCTCAGGGGTGGGATGCAGATNCTTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGA
GGTTGAGTCGTCCGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTC
TGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCCGGATTACAACATCCAGAAGGAGTCCACACTCCACCT
GGTGCTCCGCCTCCGTGGTGGCCAGTAAGTCCTCAGCCATGGAGCTGCTGCTGTTCNTAGGGGTTCACAAGTCTGCCTAT
TTGTCTTCCCCAATGGAGCTATGGTTGTCTGGTCTGGTCCTTGGTCGTGTCCCGTTTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis