Browse Element(s) Details


Os.10156.1.S1_a_at

Description gb:AK059132.1
DB_XREF= gi:32969150
TID=Os.10156.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L18 (OSJNBa0010E04.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G10, full insert sequence.
FL= gb:AK059132.1 gb:AK099043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6126011/1150S ribosomal protein L18, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein
LOC_Os03g61249OsAffx.25789.1.S1_at11/113+34722828..34723778No apical meristem protein
LOC_Os03g61260Os.10156.1.S1_a_at11/113+34724407..3472628350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g61270Os.38099.2.S1_x_at11/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.38099.1.S1_at10/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.7260.1.S1_x_at2/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61280Os.7260.1.S1_x_at11/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280Os.38099.2.S1_x_at4/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290OsAffx.22646.1.S1_at11/113+34741856..34746534cation/hydrogen exchanger, putative
LOC_Os03g61290OsAffx.4492.1.S1_x_at1/113+34741856..34746534cation/hydrogen exchanger, putative
LOC_Os03g61310Os.19976.1.S1_at10/113+34749011..34752174D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10156.1.S1_a_at--634--9011Chr03:34724600..34724624 (25 bp)
TGCAAAGGTCAAGGTGTCCACTCCC
LOC_Os03g61260
Os.10156.1.S1_a_at--171--3231Chr03:34725111..34725135 (25 bp)
CAAGACTCAGTGTTTTCCGCTCAAA
LOC_Os03g61260
Os.10156.1.S1_a_at--1025--2191Chr03:34725167..34725191 (25 bp)
ACAAAGTCATGCACTCTGGTTTCAG
LOC_Os03g61260
Os.10156.1.S1_a_at--836--7871Chr03:34725184..34725208 (25 bp)
GGTTTCAGCTTCCACAATGCACAAG
LOC_Os03g61260
Os.10156.1.S1_a_at--695--3011Chr03:34725199..34725223 (25 bp)
AATGCACAAGTCTCTTTCAAAGGAC
LOC_Os03g61260
Os.10156.1.S1_a_at--682--8991Chr03:34725865..34725889 (25 bp)
TGAAGTGATTGCCAAGTCTTGCTTG
LOC_Os03g61260
Os.10156.1.S1_a_at--58--6871Chr03:34726006..34726030 (25 bp)
GTTTGTTCATATCTCCAGAATCACT
LOC_Os03g61260
Os.10156.1.S1_a_at--1158--5231Chr03:34726023..34726047 (25 bp)
GAATCACTTGTTACTTTCTTTTTCG
LOC_Os03g61260
Os.10156.1.S1_a_at--48--10371Chr03:34726041..34726065 (25 bp)
TTTTTCGCCCACCTGTCGAACAGAG
LOC_Os03g61260
Os.10156.1.S1_a_at--874--7191Chr03:34726055..34726079 (25 bp)
GTCGAACAGAGTTTTTCTTTGTAGT
LOC_Os03g61260
Os.10156.1.S1_a_at--621--211Chr03:34726081..34726105 (25 bp)
ATTTGATTTGCTCTGCAGGCTTGGC
LOC_Os03g61260
Target Sequence 
TGCAAAGGTCAAGGTGTCCACTCCCCAGGCCGACCGCATCGCCCGCCATGTCCGCCTCCGCAAGAAGGTTAGTGGCACCA
CGGAGAGGCCAAGACTCAGTGTTTTCCGCTCAAACAAACATTTATATGCTCAAGTGATTGACGATACAAAGTCATGCACT
CTGGTTTCAGCTTCCACAATGCACAAGTCTCTTTCAAAGGACTTGGAATACTCGGCNGGGCCAACAGTTGAAGTGGCACA
AAAGATTGGTGAAGTGATTGCCAAGTCTTGCTTGGAGAAAGGAATTACCNAAGTTGTTTTTGACCGGGGTGGTTTCCTCT
ACCATGGTCGCATTAAAGCTCTGGCTGATGCTGCTAGAGAGAATGGGCTTGATTTCTGAAACCTCCAAATGTTTGTTCAT
ATCTCCAGAATCACTTGTTACTTTCTTTTTCGCCCACCTGTCGAACAGAGTTTTTCTTTGTAGTAATTTGATTTGCTCTG
CAGGCTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10156.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis