Browse Element(s) Details


Os.10245.1.S1_at

Description gb:AK108406.1
DB_XREF= gi:32993615
TID=Os.10245.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G09, full insert sequence.
FL= gb:AK108406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3770011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10245.1.S1_at--763--3351Chr04:22206929..22206953 (25 bp)
CACGCGATGGTGGATAAGCCGACGA
LOC_Os04g37700
Os.10245.1.S1_at--275--1931Chr04:22207007..22207031 (25 bp)
ACGGATCAGGAGACTTCGCCGACGA
LOC_Os04g37700
Os.10245.1.S1_at--516--4231Chr04:22207025..22207049 (25 bp)
CCGACGACGATGTCCAGTGAGGCAG
LOC_Os04g37700
Os.10245.1.S1_at--841--9331Chr04:22207293..22207317 (25 bp)
TCGCCGAGGTCATCAGCTGCTAGAG
LOC_Os04g37700
Os.10245.1.S1_at--322--4851Chr04:22207311..22207335 (25 bp)
GCTAGAGCCAATTGCGGTTGCTACA
LOC_Os04g37700
Os.10245.1.S1_at--881--10671Chr04:22207322..22207346 (25 bp)
TTGCGGTTGCTACAATGTGTACAGT
LOC_Os04g37700
Os.10245.1.S1_at--1135--6991Chr04:22207351..22207375 (25 bp)
GTACTGTATACACGTATCCGTCGTT
LOC_Os04g37700
Os.10245.1.S1_at--507--6911Chr04:22207364..22207388 (25 bp)
GTATCCGTCGTTATGCACGGCAAAT
LOC_Os04g37700
Os.10245.1.S1_at--1111--7431Chr04:22207390..22207414 (25 bp)
GTGTACAGATCTTGTGAGAAACCAT
LOC_Os04g37700
Os.10245.1.S1_at--225--9771Chr04:22207414..22207438 (25 bp)
TAATCGAGTCGGAGCCCTCTTCTTA
LOC_Os04g37700
Os.10245.1.S1_at--683--3651Chr04:22207432..22207456 (25 bp)
CTTCTTACGCGGTTGTTTGTGTTGA
LOC_Os04g37700
Target Sequence 
CACGCGATGGTGGATAAGCCGACGACGGTGCGACGGAAGACGGCATCGTCGTCGTCGCCGCCGCCGTCGTCGTCGATGAC
GGATCAGGAGACTTCGCCGACGACGATGTCCAGTGAGGCAGAGCGGCAGCGGCGCCTGCAGGAGGCGGCCGGATGGTCGG
CTTCCAGGAGGGCGCCGGACACGGCCGGGCTCGGCCGGNCCGGTNCAAGAAGCAGAAGGCTGCCGCCGACGACGACGAGG
GGGAGGAGGCTCCGGGCGCGAGAGCGGCGCCGGCGGCGAAGGGGAACAACGGCGGCAACAAGGAGGAGATGCAAGCGGCG
GGGAAGAAGACCGGGGTGAAGGTCAGGGTGAGGAGGTACAAGCTCCTCGCCGAGGTCATCAGCTGCTAGAGCCAATTGCG
GTTGCTACAATGTGTACAGTATGTGTACTGTATACACGTATCCGTCGTTATGCACGGCAAATAGTGTACAGATCTTGTGA
GAAACCATAATCGAGTCGGAGCCCTCTTCTTACGCGGTTGTTTGTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis