Browse Element(s) Details


Os.10253.1.S1_at

Description gb:AK060915.1
DB_XREF= gi:32970933
TID=Os.10253.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G06, full insert sequence.
FL= gb:AK060915.1 gb:AK099194.1 gb:AK104393.1 gb:AK104206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1276011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12730Os.14358.4.S1_x_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12730Os.14358.1.S1_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed
LOC_Os02g12750OsAffx.12010.1.S1_at10/112+6677164..6679948Tetraspanin family protein, expressed
LOC_Os02g12760Os.10253.1.S1_at11/112+6680305..6683066plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g12770OsAffx.24214.1.S1_at4/112+6687558..6689840Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12780OsAffx.24214.1.S1_at11/112+6693857..6695685Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12790Os.53733.1.S1_at10/112+6705768..6707433GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10253.1.S1_at--1113--1471Chr02:6680616..6680640 (25 bp)
AGCAAGGCAAGCCTGTAGTTTCAGG
LOC_Os02g12760
Os.10253.1.S1_at--769--9631Chr02:6680596..6680620 (25 bp)
TCAGGCTAGTTAGTGGCTCTCCCAA
LOC_Os02g12760
Os.10253.1.S1_at--500--9471Chr02:6680579..6680603 (25 bp)
TCTCCCAAGTCTGAACTTTCAGTTA
LOC_Os02g12760
Os.10253.1.S1_at--303--6251Chr02:6680554..6680578 (25 bp)
GATGGTACTTTTACTGTGTTCAGCT
LOC_Os02g12760
Os.10253.1.S1_at--277--7431Chr02:6680539..6680563 (25 bp)
GTGTTCAGCTGTTTACGGTGTGTTC
LOC_Os02g12760
Os.10253.1.S1_at--246--7431Chr02:6680520..6680544 (25 bp)
GTGTTCAGGTCTTGCTTTGTGTAGA
LOC_Os02g12760
Os.10253.1.S1_at--299--1311Chr02:6680498..6680522 (25 bp)
AGATGTCACTACACTCTAATGCGTG
LOC_Os02g12760
Os.10253.1.S1_at--585--2011Chr02:6680486..6680510 (25 bp)
ACTCTAATGCGTGTTGTCTGAAAAG
LOC_Os02g12760
Os.10253.1.S1_at--217--6271Chr02:6680445..6680469 (25 bp)
GATGTAACCTGTATAAGTGCTCAAA
LOC_Os02g12760
Os.10253.1.S1_at--566--2851Chr02:6680431..6680455 (25 bp)
AAGTGCTCAAAATACCATGAACTAG
LOC_Os02g12760
Os.10253.1.S1_at--196--2071Chr02:6680358..6680382 (25 bp)
ACTTGAAGCTGATCTTCAGAGTTCA
LOC_Os02g12760
Target Sequence 
AGCAAGGCAAGCCTGTAGTTTCAGGCTAGTTAGTGGCTCTCCCAAGTCTGAACTTTCAGTTAGATGGTACTTTTACTGTG
TTCAGCTGTTTACGGTGTGTTCAGGTCTTGCTTTGTGTAGATGTCACTACACTCTAATGCGTGTTGTCTGAAAAGAAAAA
ATGGTTGTGTAGATGTAACCTGTATAAGTGCTCAAAATACCATGAACTAGAATTACTATACATTTACAATTTTATTTAGA
TGTACTGTATGTATGTATACTTGAAGCTGATCTTCAGAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis