Browse Element(s) Details


Os.10258.1.S1_at

Description gb:AK072446.1
DB_XREF= gi:32982469
TID=Os.10258.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111G02, full insert sequence.
FL= gb:AK072446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6897011/11CPR5 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68930Os.55775.1.S1_at11/111+40382923..40386295expressed protein
LOC_Os01g68940Os.32732.1.S1_at11/111+40388472..40390482Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.34904.1.S1_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.12426.1.S1_s_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68960OsAffx.23978.1.S1_at11/111+40394670..40396454hypothetical protein
LOC_Os01g68970Os.10258.1.S1_at11/111+40397622..40400613CPR5 protein, putative, expressed
LOC_Os01g68980OsAffx.13846.2.S1_s_at11/111+40401081..40401700hypothetical protein
LOC_Os01g68980OsAffx.13846.1.S1_at4/111+40401081..40401700hypothetical protein
LOC_Os01g68990Os.52238.1.S1_at3/111+40404837..40409259retrotransposon, putative, centromere-specific
LOC_Os01g69000NANA1+40411243..40412598retrotransposon, putative, centromere-specific
LOC_Os01g69010OsAffx.19817.2.S1_at11/111+40420562..40423832MATE efflux family protein
LOC_Os01g69010OsAffx.19817.1.S1_x_at7/111+40420562..40423832MATE efflux family protein
LOC_Os01g69020Os.37927.1.S1_at11/111+40424504..40425877transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009627biological_processsystemic acquired resistance
GO:0009868biological_processjasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0010150biological_processleaf senescence
GO:0010182biological_processsugar mediated signaling
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10258.1.S1_at--1123--991Chr01:40398179..40398203 (25 bp)
AGGTTCTTTGTTCTATCCACTTACT
LOC_Os01g68970
Os.10258.1.S1_at--793--3551Chr01:40398140..40398164 (25 bp)
CATCTCTTTTATACCACGTTCTACA
LOC_Os01g68970
Os.10258.1.S1_at--1028--8091Chr01:40398114..40398138 (25 bp)
GGACCTATTTCAGTATCTCACAGAG
LOC_Os01g68970
Os.10258.1.S1_at--520--6011Chr01:40398092..40398116 (25 bp)
GAGAGCAAGTTGTCTGGTTACCATA
LOC_Os01g68970
Os.10258.1.S1_at--1120--8451Chr01:40398078..40398102 (25 bp)
TGGTTACCATACTGGGTTCGCCGGT
LOC_Os01g68970
Os.10258.1.S1_at--667--10631Chr01:40398062..40398086 (25 bp)
TTCGCCGGTGCTTGTTTTATGCTGC
LOC_Os01g68970
Os.10258.1.S1_at--580--2891Chr01:40397902..40397926 (25 bp)
AAGGTGGCGCAATACTTGTCCTGTT
LOC_Os01g68970
Os.10258.1.S1_at--1088--9071Chr01:40397792..40397816 (25 bp)
TGCTCAAGTTGGTTGCACGTAGACT
LOC_Os01g68970
Os.10258.1.S1_at--864--1891Chr01:40397776..40397800 (25 bp)
ACGTAGACTGACCTGTTAGCTGCCA
LOC_Os01g68970
Os.10258.1.S1_at--656--1651Chr01:40397752..40397776 (25 bp)
AGCCTGCCACTTTGTTGTAGTTGGA
LOC_Os01g68970
Os.10258.1.S1_at--1026--6631Chr01:40397649..40397673 (25 bp)
GTTGATTGATTGTTCCACCTGGACA
LOC_Os01g68970
Target Sequence 
AGGTTCTTTGTTCTATCCACTTACTTGGAAATCTTTTTCCATCTCTTTTATACCACGTTCTACATGGACCTATTTCAGTA
TCTCACAGAGAGCAAGTTGTCTGGTTACCATACTGGGTTCGCCGGTGCTTGTTTTATGCTGCGGTGGGGCTTATTCTTCC
AGCCTTGACTGGCTTGCTCCCGTTTGCCTCTCTTTCTGACTGGAAGGATCATTTTGTGGAAGAGATAAAATCCATTGTTA
TCNGGTGACAAGATTGAAGCATGAAATTTCTTGGATGTAAGGTGGCGCAATACTTGTCCTGTTGTATCTTTTGAAGAAGT
GAAGTTTGTTCAGTTTGAGATTAGCCTCAGAGTTTAGCTTGGTATTGTATGAACTCCAAAGGAGATTATGCTCAAGTTGG
TTGCACGTAGACTGACCTGTTAGCTGCCAGCCTGCCACTTTGTTGTAGTTGGAGTGTTATTTTAAACTTTTTTCTAGTTT
TATTCTTACTTTGTTGTAAATACTCAATAGCAAGAGATGCTGTTTATCTTTGTTGATTGATTGTTCCACCTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis