Browse Element(s) Details


Os.10285.1.S1_at

Description gb:AK106760.1
DB_XREF= gi:32991969
TID=Os.10285.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D11, full insert sequence.
FL= gb:AK106760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2073011/11Peroxidase 40 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20680Os.11220.1.S1_at11/118+12423980..12424983expressed protein
LOC_Os08g20690OsAffx.5883.1.S1_at10/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_at3/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_x_at2/118+12426836..12429826hypothetical protein
LOC_Os08g20700OsAffx.31869.1.S1_at9/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.5.S1_x_at4/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.2.S1_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.3.S1_s_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20720NANA8+12442451..12448123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20730Os.10285.1.S1_at11/118+12449911..12452062Peroxidase 40 precursor, putative, expressed
LOC_Os08g20740OsAffx.29290.1.S1_at11/118+12453741..12454064hypothetical protein
LOC_Os08g20750NANA8+12454968..12456281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20760OsAffx.29291.1.S1_at11/118+12458436..12458738hypothetical protein
LOC_Os08g20760OsAffx.13151.1.S1_x_at6/118+12458436..12458738hypothetical protein
LOC_Os08g20770NANA8+12462754..12467061retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20780Os.45173.1.S1_x_at3/118+12467328..12469185retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10285.1.S1_at--821--9611Chr08:12451264..12451288 (25 bp)
TCATCGCAGCCTACGCTTTCGATGC
LOC_Os08g20730
Os.10285.1.S1_at--712--4131Chr08:12451277..12451301 (25 bp)
CGCTTTCGATGCGTTGCTCTTCTTC
LOC_Os08g20730
Os.10285.1.S1_at--250--5691Chr08:12451305..12451329 (25 bp)
GACTTCGCATCATCTATGCTACGGA
LOC_Os08g20730
Os.10285.1.S1_at--499--3251Chr08:12451379..12451403 (25 bp)
CAACTGCCGGGTGGTGAACTAGCTA
LOC_Os08g20730
Os.10285.1.S1_at--769--4851Chr08:12451400..12451424 (25 bp)
GCTAGCTAGGTTGCTGCATGAAACA
LOC_Os08g20730
Os.10285.1.S1_at--209--5311Chr08:12451426..12451450 (25 bp)
GAAGGAAGCTGATTATGCTCCCAAA
LOC_Os08g20730
Os.10285.1.S1_at--382--3551Chr08:12451471..12451495 (25 bp)
CATCAGATAATTGCGCCAGCTATAT
LOC_Os08g20730
Os.10285.1.S1_at--223--3171Chr08:12451479..12451503 (25 bp)
AATTGCGCCAGCTATATATGTATGT
LOC_Os08g20730
Os.10285.1.S1_at--271--6931Chr08:12451498..12451522 (25 bp)
GTATGTGTCTGCTAGTTTCTCAATC
LOC_Os08g20730
Os.10285.1.S1_at--959--6831Chr08:12451512..12451536 (25 bp)
GTTTCTCAATCTAGTCATGTATCGT
LOC_Os08g20730
Os.10285.1.S1_at--166--8951Chr08:12451645..12451669 (25 bp)
TGACTATCCTGCATGTAATCGAATA
LOC_Os08g20730
Target Sequence 
TCATCGCAGCCTACGCTTTCGATGCGTTGCTCTTCTTCGACGACTTCGCATCATCTATGCTACGGATGGGGAGGCTGGCG
CCGGGAGCGGGCNACCGCNTCCGGCGAGGTCCGCCGCAACTGCCGGGTGGTGAACTAGCTAGCTAGGTTGCTGCATGAAA
CAAGAAGGAAGCTGATTATGCTCCCAAAATTAATTAGGAGTATCTGTGCATCAGATAATTGCGCCAGCTATATATGTATG
TGTCTGCTAGTTTCTCAATCTAGTCATGTATCGTTAATTAGCTAAAAAGATGATAGCTNGGATTATCCATTATNTTAAAA
AAAATTAACTAATGGTGTCTGATATTTGATTTGTTTAGTTAATCAGCTTANNNNATATATATATGACTATCCTGCATGTA
ATCGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis