Browse Element(s) Details


Os.10319.1.S1_at

Description gb:AK067553.1
DB_XREF= gi:32977571
TID=Os.10319.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108L03, full insert sequence.
FL= gb:AK067553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0665011/11pentatricopeptide, putative, expressed
LOC_Os06g278901/11NPK2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed
LOC_Os12g06670Os.21261.1.A1_at11/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06670OsAffx.5280.1.S1_at5/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06680OsAffx.22699.1.S1_x_at2/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.28610.2.S1_x_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.31700.1.S1_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009611biological_processresponse to wounding
GO:0009628biological_processresponse to abiotic stimulus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10319.1.S1_at--82--9632Chr12:3226049..3226073 (25 bp)
TCAGTTACTCCCACAGTCCTAAAAT
LOC_Os12g06650
Os.10319.1.S1_at--138--9553Chr12:3225948..3225972 (25 bp)
TCTAGGTTCTTCTATTTTGGGACGG
LOC_Os12g06650
Os.10319.1.S1_at--123--6331Chr12:3225874..3225898 (25 bp)
GATGCAATCAAAGGCTAAATCGGTT
LOC_Os12g06650
Os.10319.1.S1_at--636--7911Chr12:3225853..3225877 (25 bp)
GGTTGGTAGTTGTGATCTTTTTGAC
LOC_Os12g06650
Os.10319.1.S1_at--40--5651Chr12:3225818..3225842 (25 bp)
GACAGCCTTGACAGAATTTCTTTGT
LOC_Os12g06650
Os.10319.1.S1_at--467--5331Chr12:3225779..3225803 (25 bp)
GAAGTGACTTCTTTCGTTGCGAGCC
LOC_Os12g06650
Os.10319.1.S1_at--155--6691Chr12:3225764..3225788 (25 bp)
GTTGCGAGCCTGTAGGTAGGTACCA
LOC_Os12g06650
Os.10319.1.S1_at--1028--7831Chr12:3225746..3225770 (25 bp)
GGTACCAAAGGTCCACAGCATTGCT
LOC_Os12g06650
Os.10319.1.S1_at--633--10011Chr12:3225713..3225737 (25 bp)
TAGACACAAACGAACATGGCCTGGG
LOC_Os12g06650
Os.10319.1.S1_at--696--10791Chr12:3225681..3225705 (25 bp)
TTGGCCCCAACTTTGTTGAAACTGG
LOC_Os12g06650
Os.10319.1.S1_at--429--271Chr12:3225644..3225668 (25 bp)
ATATGTCTTTGTGCTCTAGTAATAA
LOC_Os12g06650
Target Sequence 
TCAGTTACTCCCACAGTCCTAAAATATAAGAACCTAAAACCGNNGATGTGACATTTCCTAGNANAATGAATCTTAAGAGG
CACTAAAAAATGTCTCATTCNATTCTAGGTTCTTCTATTTTGGGACGGATGGAGTAGTAGGAAGAAACCAGGTCATGTTC
TTGCAATGACTACTGGTGATGCAATCAAAGGCTAAATCGGTTGGTAGTTGTGATCTTTTTGACATAAAAGGAAGACAGCC
TTGACAGAATTTCTTTGTGTAGATGCAGAACTGAAGTGACTTCTTTCGTTGCGAGCCTGTAGGTAGGTACCAAAGGTCCA
CAGCATTGCTTGAAAATATAGACACAAACGAACATGGCCTGGGGTTGGAGTTGGCCCCAACTTTGTTGAAACTGGGTTTG
TTTTATNATATGTCTTTGTGCTCTAGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis