Browse Element(s) Details


Os.10351.2.S1_at

Description gb:AK107078.1
DB_XREF= gi:32992287
TID=Os.10351.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Calcium-transporting ATPase 8, plasma membrane-type (P0686C03.46), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-F06, full insert sequence.
FL= gb:AK107078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4053011/11Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40500Os.55699.1.S1_at10/118+25495911..25496794expressed protein
LOC_Os08g40510Os.11481.1.S1_s_at11/118+25510771..25512440expressed protein
LOC_Os08g40520Os.43185.1.S1_at11/118+25516041..25518798expressed protein
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10351.2.S1_at--596--6851Chr08:25519818..25519960 (25 bp)
GTTTGCTCTAGTTCAGCTGTAGGAT
LOC_Os08g40530
Os.10351.2.S1_at--299--6151Chr08:25519791..25519815 (25 bp)
GAGGCTCACGTACTCGAAGCTCAAA
LOC_Os08g40530
Os.10351.2.S1_at--645--4111Chr08:25519777..25519801 (25 bp)
CGAAGCTCAAAGTCCATCGAGGTTG
LOC_Os08g40530
Os.10351.2.S1_at--91--10771Chr08:25519755..25519779 (25 bp)
TTGAGGAACTCGTCGGCCGGATCCA
LOC_Os08g40530
Os.10351.2.S1_at--140--1591Chr08:25519590..25519614 (25 bp)
AGCTCGCACTGGACGGCTCGGATCT
LOC_Os08g40530
Os.10351.2.S1_at--472--471Chr08:25519569..25519593 (25 bp)
ATCTCCTCCTGCAGGCGGTTGATGA
LOC_Os08g40530
Os.10351.2.S1_at--900--4311Chr08:25519463..25519487 (25 bp)
CCATCGGCAAGCTCTAGTACGTACA
LOC_Os08g40530
Os.10351.2.S1_at--761--532Chr08:25519352..25519376 (25 bp)
ATCCCTTTAGGTTACTGCATATCCA
LOC_Os08g40530
Os.10351.2.S1_at--830--4951Chr08:25519336..25519360 (25 bp)
GCATATCCATATAGTCACAGCAAGC
LOC_Os08g40530
Os.10351.2.S1_at--450--831Chr08:25519267..25519291 (25 bp)
ATGGATCAGACGTTACCCACTTTCA
LOC_Os08g40530
Os.10351.2.S1_at--377--4371Chr08:25519251..25519275 (25 bp)
CCACTTTCATCACGACAACTATCTA
LOC_Os08g40530
Target Sequence 
GTTTGCTCTAGTTCAGCTGTAGGATTTGAGGCTCACGTACTCGAAGCTCAAAGTCCATCGAGGTTGAGGAACTCGTCGGC
CGGATCCAGCAACGGCGGCGGCGACTGCTCCTCCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGACGGCAATGGTGGCG
GAGGAGGTGGAGGTGGAGGTTGCTGGGAGGAAGCGACGGCGATGGCGAGGTGAGCCTGCGTCCTGGCCAGCTCGCACTGG
ACGGCTCGGATCTCCTCCTGCAGGCGGTTGATGATCCCGGTGCAGCCGTACACCGGGTCCTGCACCCTCCAGTACGCCTC
CATCGCCATCGTGTTCGCCGCGTTGCCCCTCTCCGCCATCGGCAAGCTCTAGTACGTACAAAAAAAAAGTTCACGAAGAT
AAATCAGTCATCAATAAAAAGTTAGTTAATATGCTTGAAAATATGTTATGGGTAAACATAACATGAATCCCTTTAGGTTA
CTGCATATCCATATAGTCACAGCAAGCTAGTGACATGTGAGTATGAGTTCATATGTTAGTGACTATCCGATATGGATCAG
ACGTTACCCACTTTCATCACGACAACTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10351.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis