Browse Element(s) Details


Os.10373.1.S1_at

Description gb:AK068670.1
DB_XREF= gi:32978687
TID=Os.10373.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161J19, full insert sequence.
FL= gb:AK068670.1 gb:AK103128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4141011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed
LOC_Os07g41380Os.53737.1.S1_at2/117+24793442..24797855retrotransposon protein, putative, unclassified
LOC_Os07g41390OsAffx.5593.1.S1_at9/117+24798837..24802371hypothetical protein
LOC_Os07g41400NANA7+24803996..24804217hypothetical protein
LOC_Os07g41410Os.10373.1.S1_at11/117+24807955..24808672expressed protein
LOC_Os07g41420Os.29966.2.S1_x_at3/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420Os.29966.1.S1_x_at2/117+24812788..24813900hypothetical protein
LOC_Os07g41420OsAffx.20135.1.A1_x_at1/117+24812788..24813900hypothetical protein
LOC_Os07g41430Os.41695.15.S1_s_at11/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.2.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.3.S1_x_at10/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.5.S1_x_at9/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41430Os.41695.4.S1_x_at1/117+24814892..24821617transposon protein, putative, Mutator sub-class
LOC_Os07g41439NANA7+24830995..24831751hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10373.1.S1_at--664--4151Chr07:24808367..24808391 (25 bp)
CGCCGCTTTCCTGTAGGGAAGAAAT
LOC_Os07g41410
Os.10373.1.S1_at--1065--7591Chr07:24808382..24808406 (25 bp)
GGGAAGAAATGGTATCCGCCGCCGC
LOC_Os07g41410
Os.10373.1.S1_at--339--3791Chr07:24808419..24808443 (25 bp)
CTCGCTGGCGTTGGCTTGCTGGTTC
LOC_Os07g41410
Os.10373.1.S1_at--832--7911Chr07:24808457..24808481 (25 bp)
GGTTGAGTGAGTAATCGCCTTGCTA
LOC_Os07g41410
Os.10373.1.S1_at--160--1231Chr07:24808504..24808528 (25 bp)
AGTTCATGCTTAGATTACTCTTGTT
LOC_Os07g41410
Os.10373.1.S1_at--756--10471Chr07:24808518..24808542 (25 bp)
TTACTCTTGTTTGGCTGTGAATCTG
LOC_Os07g41410
Os.10373.1.S1_at--136--4731Chr07:24808531..24808555 (25 bp)
GCTGTGAATCTGTGTGGGCTAGTAA
LOC_Os07g41410
Os.10373.1.S1_at--681--6891Chr07:24808552..24808576 (25 bp)
GTAATTCACGGTGTTTAGGCGACGT
LOC_Os07g41410
Os.10373.1.S1_at--969--871Chr07:24808568..24808592 (25 bp)
AGGCGACGTGGTTATATGCTAGTAC
LOC_Os07g41410
Os.10373.1.S1_at--697--251Chr07:24808581..24808605 (25 bp)
ATATGCTAGTACATCCATGGTCATG
LOC_Os07g41410
Os.10373.1.S1_at--719--7111Chr07:24808600..24808624 (25 bp)
GTCATGTGTAATAAGGTGCCGTGTA
LOC_Os07g41410
Target Sequence 
CGCCGCTTTCCTGTAGGGAAGAAATGGTATCCGCCGCCGCCGACGTCCGCCGCTCGCTGGCGTTGGCTTGCTGGTTCGTG
TGTGGCGTTTGGTTGAGTGAGTAATCGCCTTGCTAATTAAGGAGGGATTTGTGATGGAGTTCATGCTTAGATTACTCTTG
TTTGGCTGTGAATCTGTGTGGGCTAGTAATTCACGGTGTTTAGGCGACGTGGTTATATGCTAGTACATCCATGGTCATGT
GTAATAAGGTGCCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis