Browse Element(s) Details


Os.10374.1.S1_at

Description gb:AK062407.1
DB_XREF= gi:32972425
TID=Os.10374.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E09, full insert sequence.
FL= gb:AK062407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0258911/11hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os07g079102/11potassium channel AKT5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02540Os.14454.1.A1_at11/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540Os.56849.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02540OsAffx.28871.1.S1_at1/1112+863792..868553transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g02550Os.17196.1.A1_s_at11/1112+875293..876652expressed protein
LOC_Os12g02550Os.50540.1.S1_at2/1112+875293..876652expressed protein
LOC_Os12g02560OsAffx.31554.1.S1_at9/1112+880780..882971hypothetical protein
LOC_Os12g02560OsAffx.31656.2.S1_at3/1112+880780..882971hypothetical protein
LOC_Os12g02570Os.28346.1.S1_x_at1/1112+886161..889817expressed protein
LOC_Os12g02589OsAffx.7463.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.2.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02589Os.10374.1.S1_at11/1112+890788..897434hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g02610NANA12+898490..899104hypothetical protein
LOC_Os12g02620Os.10542.1.S1_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02620Os.10542.1.S1_s_at11/1112+905322..907654Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02630Os.51389.1.S2_at10/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02630Os.51389.1.S1_at4/1112+909825..911365Cytochrome P450 72A1, putative, expressed
LOC_Os12g02640Os.47955.1.S1_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02640Os.47955.2.S1_x_at11/1112+911504..915531Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009860biological_processpollen tube growth
GO:0042391biological_processregulation of membrane potential
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0016787molecular_functionhydrolase activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10374.1.S1_at--789--10312Chr12:891311..891335 (25 bp)
TTTCTTTGATCGATCCCTTGCTGTT
LOC_Os12g02589
Os.10374.1.S1_at--292--551Chr12:891323..891347 (25 bp)
ATCCCTTGCTGTTTCTTGATCAACA
LOC_Os12g02589
Os.10374.1.S1_at--320--6451Chr12:891340..891364 (25 bp)
GATCAACAGCAATTCTTTGGTGTTC
LOC_Os12g02589
Os.10374.1.S1_at--191--10251Chr12:891355..891379 (25 bp)
TTTGGTGTTCTATCTTGGTTCAGTA
LOC_Os12g02589
Os.10374.1.S1_at--547--7893Chr12:891371..891395 (25 bp)
GGTTCAGTATACTCTAGTACTCACA
LOC_Os12g02589
Os.10374.1.S1_at--365--7012Chr12:891387..891411 (25 bp)
GTACTCACAAGTCACATCACATGAT
LOC_Os12g02589
Os.10374.1.S1_at--985--6731Chr12:891427..891451 (25 bp)
GTTCTTGGTTTTAATCACATGATCT
LOC_Os12g02589
Os.10374.1.S1_at--1157--6413Chr12:891447..891471 (25 bp)
GATCTCAATGTGATCATGTGATTTT
LOC_Os12g02589
Os.10374.1.S1_at--567--7411Chr12:891464..891488 (25 bp)
GTGATTTTTATTTCTTTCCAATTCT
LOC_Os12g02589
Os.10374.1.S1_at--63--3191Chr12:891482..891506 (25 bp)
CAATTCTTGTTGGATGTTCGTGAGG
LOC_Os12g02589
Os.10374.1.S1_at--38--6092Chr12:891506..891530 (25 bp)
GAGTAGTTGATATCTTCTGTGGTGT
LOC_Os12g02589
Target Sequence 
TTTCTTTGATCGATCCCTTGCTGTTTCTTGATCAACAGCAATTCTTTGGTGTTCTATCTTGGTTCAGTATACTCTAGTAC
TCACAAGTCACATCACATGATGGTTTCTTGGCGTGTGTTCTTGGTTTTAATCACATGATCTCAATGTGATCATGTGATTT
TTATTTCTTTCCAATTCTTGTTGGATGTTCGTGAGGAGTAGTTGATATCTTCTGTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis