Browse Element(s) Details


Os.10376.1.S1_at

Description gb:AK101886.1
DB_XREF= gi:32987095
TID=Os.10376.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070L24, full insert sequence.
FL= gb:AK101886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3488411/11SacI homology domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34850Os.31904.1.S1_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850OsAffx.24579.1.S1_x_at11/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34850Os.52033.1.S1_at10/112+20894008..20904607CW-type Zinc Finger family protein, expressed
LOC_Os02g34860Os.11361.1.S1_at11/112+20908008..20913251Regulator of chromosome condensation family protein, expressed
LOC_Os02g34870NANA2+20913392..20914524expressed protein
LOC_Os02g34884Os.10376.1.S1_at11/112+20915571..20926938SacI homology domain containing protein, expressed
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10376.1.S1_at--295--6291Chr02:20916067..20916091 (25 bp)
GATGTTCGCCATTTAGTGTTGTCAC
LOC_Os02g34884
Os.10376.1.S1_at--829--7391Chr02:20916052..20916076 (25 bp)
GTGTTGTCACTTCTATGGGCTGGTC
LOC_Os02g34884
Os.10376.1.S1_at--778--3411Chr02:20916002..20916026 (25 bp)
CAGAGCCAATGGTCGGGTGTTCACC
LOC_Os02g34884
Os.10376.1.S1_at--749--6751Chr02:20915984..20916008 (25 bp)
GTTCACCAACAGACCTCGTTTTTAT
LOC_Os02g34884
Os.10376.1.S1_at--497--6791Chr02:20915967..20915991 (25 bp)
GTTTTTATCAGTCGCGCCATTGAAG
LOC_Os02g34884
Os.10376.1.S1_at--1009--8131Chr02:20915923..20915947 (25 bp)
GGACACTGAGCTGCCTCATAGGTTA
LOC_Os02g34884
Os.10376.1.S1_at--801--5651Chr02:20915885..20915909 (25 bp)
GACAGTCAGCACCTTGTTTCATATG
LOC_Os02g34884
Os.10376.1.S1_at--809--10751Chr02:20915828..20915852 (25 bp)
TTGACCCTCCCCTATATTGTAATGA
LOC_Os02g34884
Os.10376.1.S1_at--498--10371Chr02:20915751..20915775 (25 bp)
TTTTGATTTCCAGCCATCTTTTGGG
LOC_Os02g34884
Os.10376.1.S1_at--807--371Chr02:20915724..20915748 (25 bp)
ATCACGTTCACGATTCTGTTTGACT
LOC_Os02g34884
Os.10376.1.S1_at--257--3811Chr02:20915676..20915700 (25 bp)
CTCCTGTACACTGTTTCATCGACAA
LOC_Os02g34884
Target Sequence 
GATGTTCGCCATTTAGTGTTGTCACTTCTATGGGCTGGTCTTTGCATTGGCATCACACATTTTGTCAGAGCCAATGGTCG
GGTGTTCACCAACAGACCTCGTTTTTATCAGTCGCGCCATTGAAGCAAAACAACCACTTTACACGGACACTGAGCTGCCT
CATAGGTTATCATTTTTCATCAGACAGTCAGCACCTTGTTTCATATGAAGATATATTGGTCGCATTTTTTGCTGGGAATT
TGACCCTCCCCTATATTGTAATGAGTTTTATTTTCCATTTTTGTAACAAGTTTTTTTTTCCTTTTCCTTCTCATTGTTTT
GATTTCCAGCCATCTTTTGGGGCATCACGTTCACGATTCTGTTTGACTTAGCAGTATATAATTCAATACACCTCCTGTAC
ACTGTTTCATCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis