Browse Element(s) Details


Os.10403.1.S1_at

Description gb:AK101646.1
DB_XREF= gi:32986855
TID=Os.10403.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055P14, full insert sequence.
FL= gb:AK101646.1 gb:AK103255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5535011/11cucumisin-like serine protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005576cellular_componentextracellular region
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10403.1.S1_at--972--9431Chr03:31427455..31427479 (25 bp)
TCGGCCAGCCCGGAACATACAAGGT
LOC_Os03g55350
Os.10403.1.S1_at--261--2091Chr03:31427441..31427465 (25 bp)
ACATACAAGGTGACAGCCAGCGCCG
LOC_Os03g55350
Os.10403.1.S1_at--987--531Chr03:31427243..31427267 (25 bp)
ATCGCCGTGACATGGACCTGACCGT
LOC_Os03g55350
Os.10403.1.S1_at--716--4151Chr03:31427215..31427239 (25 bp)
CGCGCTCATAGCTAGATCTTCTGGA
LOC_Os03g55350
Os.10403.1.S1_at--659--9751Chr03:31427142..31427166 (25 bp)
TAATCTGCCGATTAGTGTGGCGAAG
LOC_Os03g55350
Os.10403.1.S1_at--991--9391Chr03:31427115..31427139 (25 bp)
TCGTTTCAATTTCTTAGCTCCAGCC
LOC_Os03g55350
Os.10403.1.S1_at--402--4791Chr03:31427099..31427123 (25 bp)
GCTCCAGCCTTGTTTAGTTGTTCGA
LOC_Os03g55350
Os.10403.1.S1_at--1152--1231Chr03:31427084..31427108 (25 bp)
AGTTGTTCGAACTGTGGCATAGCGA
LOC_Os03g55350
Os.10403.1.S1_at--107--6031Chr03:31427041..31427065 (25 bp)
GAGAGTGATCCGAGTTAGCTCCACT
LOC_Os03g55350
Os.10403.1.S1_at--386--6071Chr03:31427030..31427054 (25 bp)
GAGTTAGCTCCACTCCTAACAGGAG
LOC_Os03g55350
Os.10403.1.S1_at--817--5171Chr03:31426968..31426992 (25 bp)
GCAAGTGGTTGCTCGTAGTAGTACA
LOC_Os03g55350
Target Sequence 
TCGGCCAGCCCGGAACATACAAGGTGACAGCCAGCGCCGCCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCG
ACGCTGACGTTCACCAAGTCCGGCGAGAAGCAGAGCTACACGGTGAGCTTCGCGGCGGCCGCGATGCCGTCCGGCACGAA
CGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGT
CGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTG
CCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAA
GTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGAC
CAGCAAAGCAAGTGGTTGCTCGTAGTAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis