Browse Element(s) Details


Os.10417.1.S1_at

Description gb:AK064999.1
DB_XREF= gi:32975017
TID=Os.10417.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10417 (NCBI UniGene Cluster)
UG_TITLE=SS412 mRNA for pumilo protein, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E01, full insert sequence.
FL= gb:AK121539.1 gb:AK064999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4083011/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40800NANA8+25675039..25681203retrotransposon protein, putative, unclassified
LOC_Os08g40810NANA8+25681831..25682766retrotransposon protein, putative, unclassified
LOC_Os08g40820Os.53388.2.S1_at11/118+25684918..25690623expressed protein
LOC_Os08g40820Os.53388.1.S1_x_at11/118+25684918..25690623expressed protein
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10417.1.S1_at--776--4611Chr08:25710635..25710659 (25 bp)
GCGAGATCTTCTGATCCGGGAGATT
LOC_Os08g40830
Os.10417.1.S1_at--722--1371Chr08:25711025..25711049 (25 bp)
AGAGCTCCTGCTCAGCCGTGTGAAG
LOC_Os08g40830
Os.10417.1.S1_at--814--8191Chr08:25711069..25711093 (25 bp)
GGAAGTACACCTATGGCAAGCATAT
LOC_Os08g40830
Os.10417.1.S1_at--36--8071Chr08:25711233..25711257 (25 bp)
GGAGACACCGAGTCAGATTCTTGAA
LOC_Os08g40830
Os.10417.1.S1_at--112--10331Chr08:25711269..25711293 (25 bp)
TTTCTTCACTGGAGGTGTATGCCTG
LOC_Os08g40830
Os.10417.1.S1_at--1142--8751Chr08:25711284..25711308 (25 bp)
TGTATGCCTGGAGCCCTCAAGATGA
LOC_Os08g40830
Os.10417.1.S1_at--1091--2791Chr08:25711302..25711326 (25 bp)
AAGATGAACAACCTCCAGTGCTTCC
LOC_Os08g40830
Os.10417.1.S1_at--141--2431Chr08:25711339..25711363 (25 bp)
AAAACTCTTGTCTCCTTCAGATTGT
LOC_Os08g40830
Os.10417.1.S1_at--973--1111Chr08:25711369..25711393 (25 bp)
AGTGACTCTCATTAGGTGGTAGCCT
LOC_Os08g40830
Os.10417.1.S1_at--73--7751Chr08:25711415..25711439 (25 bp)
GGTGTGCATCAGTGTATCTATGTTA
LOC_Os08g40830
Os.10417.1.S1_at--1039--5711Chr08:25711535..25711559 (25 bp)
GACTGCTTGGTAATGTAATCGCTTG
LOC_Os08g40830
Target Sequence 
GCGAGATCTTCTGATCCGGGAGATTGTGAAGCAGACTGAGGGCAATGATAACTTGCTGGCGATGATGAAGGACCAGTATG
CAAACTATGTAGTTCAGAAGATACTTGAAACATGCAACGAGCANCAGAGAGAGCTCCTGCTCAGCCGTGTGAAGGGCCAT
CTGCAAGCATTAAGGAAGTACACCTATGGCAAGCATATTGTGAGCCGAGTTGAGCAACTTTGTGGTGAAGGAGACACCGA
GTCAGATTCTTGAAAAATTAGCATATTTCTTCACTGGAGGTGTATGCCTGGAGCCCTCAAGATGAACAACCTCCAGTGCT
TCCAGAAGGGCTAACAAAACTCTTGTCTCCTTCAGATTGTACATAAGTGACTCTCATTAGGTGGTAGCCTAGGTGCTAGA
TACAGTTTAGTGGTGTGCATCAGTGTATCTATGTTAGGGGTTTGCTTATTTATAGAATCAATAATGGTACTGTAATAGTT
GGGTAGCTGTTTGCAAAAGAAGATTTAGTGGCTTGTATGCGATAAATTATCGACTGCTTGGTAATGTAATCGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis